Hb_000941_030

Information

Type -
Description -
Location Contig941: 51047-52708
Sequence    

Annotation

kegg
ID rcu:RCOM_0504480
description rnf5, putative
nr
ID XP_012087783.1
description PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
swissprot
ID Q8GUK7
description E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3 PE=1 SV=1
trembl
ID A0A067JKY5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25557 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63166: 50528-52700
cDNA
(Sanger)
(ID:Location)		 034_P06.ab1: 50528-51759

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000941_030 0.0 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
2 Hb_001935_160 0.0643922007 - - PREDICTED: F-box protein At5g51370-like [Jatropha curcas]
3 Hb_004429_010 0.0687676548 - - calcineurin-like phosphoesterase [Manihot esculenta]
4 Hb_001171_030 0.074945294 transcription factor TF Family: LUG PREDICTED: transcriptional corepressor LEUNIG-like [Jatropha curcas]
5 Hb_000008_240 0.0760452619 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000977_300 0.0775944296 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
7 Hb_004659_090 0.0785325041 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
8 Hb_003142_040 0.0795770149 - - Sf3a3 [Gossypium arboreum]
9 Hb_022425_030 0.0812047521 - - PREDICTED: casein kinase I [Jatropha curcas]
10 Hb_002045_250 0.0826651566 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP63 isoform X3 [Jatropha curcas]
11 Hb_000265_090 0.0836971475 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
12 Hb_001221_090 0.0848097482 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
13 Hb_000665_230 0.0848716627 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
14 Hb_005563_060 0.0858831785 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
15 Hb_005357_260 0.0861728273 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
16 Hb_000331_580 0.0862098803 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
17 Hb_004517_020 0.0865237096 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
18 Hb_002027_280 0.086830679 - - PREDICTED: sister-chromatid cohesion protein 3 [Jatropha curcas]
19 Hb_170077_010 0.0876324105 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
20 Hb_000479_070 0.0876988964 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]

Gene co-expression network

sample Hb_000941_030 Hb_000941_030 Hb_001935_160 Hb_001935_160 Hb_000941_030--Hb_001935_160 Hb_004429_010 Hb_004429_010 Hb_000941_030--Hb_004429_010 Hb_001171_030 Hb_001171_030 Hb_000941_030--Hb_001171_030 Hb_000008_240 Hb_000008_240 Hb_000941_030--Hb_000008_240 Hb_000977_300 Hb_000977_300 Hb_000941_030--Hb_000977_300 Hb_004659_090 Hb_004659_090 Hb_000941_030--Hb_004659_090 Hb_012055_110 Hb_012055_110 Hb_001935_160--Hb_012055_110 Hb_002475_040 Hb_002475_040 Hb_001935_160--Hb_002475_040 Hb_000027_050 Hb_000027_050 Hb_001935_160--Hb_000027_050 Hb_000066_150 Hb_000066_150 Hb_001935_160--Hb_000066_150 Hb_000879_040 Hb_000879_040 Hb_001935_160--Hb_000879_040 Hb_002027_280 Hb_002027_280 Hb_004429_010--Hb_002027_280 Hb_002092_070 Hb_002092_070 Hb_004429_010--Hb_002092_070 Hb_009252_050 Hb_009252_050 Hb_004429_010--Hb_009252_050 Hb_003124_160 Hb_003124_160 Hb_004429_010--Hb_003124_160 Hb_002284_170 Hb_002284_170 Hb_004429_010--Hb_002284_170 Hb_001221_090 Hb_001221_090 Hb_004429_010--Hb_001221_090 Hb_003142_040 Hb_003142_040 Hb_001171_030--Hb_003142_040 Hb_002968_070 Hb_002968_070 Hb_001171_030--Hb_002968_070 Hb_001723_140 Hb_001723_140 Hb_001171_030--Hb_001723_140 Hb_000189_630 Hb_000189_630 Hb_001171_030--Hb_000189_630 Hb_001171_030--Hb_000977_300 Hb_000529_060 Hb_000529_060 Hb_001171_030--Hb_000529_060 Hb_000331_580 Hb_000331_580 Hb_000008_240--Hb_000331_580 Hb_004517_020 Hb_004517_020 Hb_000008_240--Hb_004517_020 Hb_002768_050 Hb_002768_050 Hb_000008_240--Hb_002768_050 Hb_005568_040 Hb_005568_040 Hb_000008_240--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000008_240--Hb_002007_110 Hb_000479_240 Hb_000479_240 Hb_000008_240--Hb_000479_240 Hb_000977_300--Hb_004517_020 Hb_000977_300--Hb_000529_060 Hb_000120_910 Hb_000120_910 Hb_000977_300--Hb_000120_910 Hb_000977_300--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_000977_300--Hb_000110_350 Hb_000645_130 Hb_000645_130 Hb_004659_090--Hb_000645_130 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_000958_050 Hb_000958_050 Hb_004659_090--Hb_000958_050 Hb_000806_030 Hb_000806_030 Hb_004659_090--Hb_000806_030 Hb_009302_030 Hb_009302_030 Hb_004659_090--Hb_009302_030 Hb_004659_090--Hb_000110_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.7268 33.5212 18.3072 19.9163 15.0627 14.7364
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.06064 4.88542 11.7554 20.1838 19.9817

CAGE analysis