Hb_000645_130

Information

Type -
Description -
Location Contig645: 104448-120278
Sequence    

Annotation

kegg
ID pop:POPTR_0010s15260g
description hypothetical protein
nr
ID XP_012084058.1
description PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
swissprot
ID Q8WWQ0
description PH-interacting protein OS=Homo sapiens GN=PHIP PE=1 SV=2
trembl
ID U5FYX2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s15260g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52261: 104472-120293 , PASA_asmbl_52262: 104700-104946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000645_130 0.0 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
2 Hb_009302_030 0.056491001 - - hypothetical protein RCOM_1176340 [Ricinus communis]
3 Hb_000958_050 0.0593134251 - - hypothetical protein JCGZ_16781 [Jatropha curcas]
4 Hb_004659_090 0.0617450527 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
5 Hb_003939_060 0.0652698298 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000500_300 0.0715754881 - - PREDICTED: nucleolar protein 10 [Jatropha curcas]
7 Hb_000806_030 0.0718914964 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
8 Hb_002056_100 0.0726214045 transcription factor TF Family: C2H2 PREDICTED: probable lysine-specific demethylase ELF6 [Jatropha curcas]
9 Hb_000003_410 0.072989126 - - PREDICTED: intron-binding protein aquarius [Jatropha curcas]
10 Hb_000579_010 0.0736330745 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
11 Hb_003929_210 0.0737276705 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_000996_020 0.0765676571 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
13 Hb_004236_010 0.0772637731 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
14 Hb_001534_210 0.0776773161 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
15 Hb_000030_140 0.0779225922 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
16 Hb_002968_070 0.0781605785 - - PREDICTED: transcription initiation factor TFIID subunit 4b isoform X2 [Jatropha curcas]
17 Hb_000445_060 0.0794942153 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
18 Hb_013405_160 0.0802779363 - - PREDICTED: methyltransferase-like protein 1 isoform X2 [Jatropha curcas]
19 Hb_007283_030 0.080795262 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
20 Hb_002687_090 0.0816804975 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_000645_130 Hb_000645_130 Hb_009302_030 Hb_009302_030 Hb_000645_130--Hb_009302_030 Hb_000958_050 Hb_000958_050 Hb_000645_130--Hb_000958_050 Hb_004659_090 Hb_004659_090 Hb_000645_130--Hb_004659_090 Hb_003939_060 Hb_003939_060 Hb_000645_130--Hb_003939_060 Hb_000500_300 Hb_000500_300 Hb_000645_130--Hb_000500_300 Hb_000806_030 Hb_000806_030 Hb_000645_130--Hb_000806_030 Hb_009302_030--Hb_003939_060 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_005701_050 Hb_005701_050 Hb_000958_050--Hb_005701_050 Hb_000003_410 Hb_000003_410 Hb_000958_050--Hb_000003_410 Hb_000934_210 Hb_000934_210 Hb_000958_050--Hb_000934_210 Hb_002007_110 Hb_002007_110 Hb_000958_050--Hb_002007_110 Hb_012055_110 Hb_012055_110 Hb_000958_050--Hb_012055_110 Hb_170077_010 Hb_170077_010 Hb_004659_090--Hb_170077_010 Hb_004659_090--Hb_000958_050 Hb_004659_090--Hb_000806_030 Hb_004659_090--Hb_009302_030 Hb_000110_350 Hb_000110_350 Hb_004659_090--Hb_000110_350 Hb_003929_210 Hb_003929_210 Hb_003939_060--Hb_003929_210 Hb_003939_060--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_003939_060--Hb_002007_110 Hb_000500_300--Hb_001534_210 Hb_002056_100 Hb_002056_100 Hb_000500_300--Hb_002056_100 Hb_005523_020 Hb_005523_020 Hb_000500_300--Hb_005523_020 Hb_000445_060 Hb_000445_060 Hb_000500_300--Hb_000445_060 Hb_003849_140 Hb_003849_140 Hb_000500_300--Hb_003849_140 Hb_000806_030--Hb_002056_100 Hb_001279_040 Hb_001279_040 Hb_000806_030--Hb_001279_040 Hb_000179_190 Hb_000179_190 Hb_000806_030--Hb_000179_190 Hb_000806_030--Hb_003929_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.50182 8.63303 5.84824 2.91468 3.41967 3.60279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.83859 1.80875 2.83347 4.5388 6.61301

CAGE analysis