Hb_005834_040

Information

Type -
Description -
Location Contig5834: 45358-65538
Sequence    

Annotation

kegg
ID rcu:RCOM_1092960
description cation:chloride symporter, putative
nr
ID XP_012075650.1
description PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
swissprot
ID Q2UVJ5
description Cation-chloride cotransporter 1 OS=Arabidopsis thaliana GN=CCC1 PE=1 SV=1
trembl
ID A0A067KSY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09247 PE=4 SV=1
Gene Ontology
ID GO:0005768
description cation-chloride cotransporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49890: 45519-56934
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005834_040 0.0 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
2 Hb_000189_630 0.0634517019 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
3 Hb_000110_350 0.0637057051 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
4 Hb_009302_030 0.0673017069 - - hypothetical protein RCOM_1176340 [Ricinus communis]
5 Hb_004517_020 0.0694606496 - - PREDICTED: probable ubiquitin-like-specific protease 2B isoform X1 [Jatropha curcas]
6 Hb_000445_060 0.0757882442 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
7 Hb_170077_010 0.0775528199 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]
8 Hb_005403_010 0.0807642067 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
9 Hb_000373_170 0.0816020903 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
10 Hb_000868_120 0.0816753427 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Jatropha curcas]
11 Hb_000034_110 0.0817409636 - - sentrin/sumo-specific protease, putative [Ricinus communis]
12 Hb_004659_090 0.0826378509 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
13 Hb_009486_160 0.0827189684 - - PREDICTED: metacaspase-1 [Jatropha curcas]
14 Hb_000977_300 0.083457379 - - PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Malus domestica]
15 Hb_005333_140 0.084289738 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 16 isoform X1 [Jatropha curcas]
16 Hb_000373_230 0.0851499056 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
17 Hb_000996_020 0.0854075214 - - PREDICTED: RNA-binding protein NOB1 [Jatropha curcas]
18 Hb_004526_010 0.0854346193 - - signal recognition particle receptor alpha subunit, putative [Ricinus communis]
19 Hb_004319_050 0.0864812936 - - PREDICTED: senescence-associated carboxylesterase 101-like [Populus euphratica]
20 Hb_001723_010 0.0865095714 - - PREDICTED: E3 ubiquitin-protein ligase UPL6 [Jatropha curcas]

Gene co-expression network

sample Hb_005834_040 Hb_005834_040 Hb_000189_630 Hb_000189_630 Hb_005834_040--Hb_000189_630 Hb_000110_350 Hb_000110_350 Hb_005834_040--Hb_000110_350 Hb_009302_030 Hb_009302_030 Hb_005834_040--Hb_009302_030 Hb_004517_020 Hb_004517_020 Hb_005834_040--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_005834_040--Hb_000445_060 Hb_170077_010 Hb_170077_010 Hb_005834_040--Hb_170077_010 Hb_003142_040 Hb_003142_040 Hb_000189_630--Hb_003142_040 Hb_001171_030 Hb_001171_030 Hb_000189_630--Hb_001171_030 Hb_000977_300 Hb_000977_300 Hb_000189_630--Hb_000977_300 Hb_000189_630--Hb_004517_020 Hb_005333_140 Hb_005333_140 Hb_000189_630--Hb_005333_140 Hb_000110_350--Hb_170077_010 Hb_000179_190 Hb_000179_190 Hb_000110_350--Hb_000179_190 Hb_003929_210 Hb_003929_210 Hb_000110_350--Hb_003929_210 Hb_002768_050 Hb_002768_050 Hb_000110_350--Hb_002768_050 Hb_000110_350--Hb_000445_060 Hb_000996_020 Hb_000996_020 Hb_000110_350--Hb_000996_020 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_000120_910 Hb_000120_910 Hb_004517_020--Hb_000120_910 Hb_001723_010 Hb_001723_010 Hb_004517_020--Hb_001723_010 Hb_004517_020--Hb_000977_300 Hb_000008_240 Hb_000008_240 Hb_004517_020--Hb_000008_240 Hb_000373_170 Hb_000373_170 Hb_004517_020--Hb_000373_170 Hb_004517_020--Hb_000110_350 Hb_000445_060--Hb_000996_020 Hb_000868_120 Hb_000868_120 Hb_000445_060--Hb_000868_120 Hb_000445_060--Hb_002768_050 Hb_000661_120 Hb_000661_120 Hb_000445_060--Hb_000661_120 Hb_000445_060--Hb_000373_170 Hb_005403_010 Hb_005403_010 Hb_170077_010--Hb_005403_010 Hb_023344_140 Hb_023344_140 Hb_170077_010--Hb_023344_140 Hb_000358_220 Hb_000358_220 Hb_170077_010--Hb_000358_220 Hb_170077_010--Hb_000996_020 Hb_002461_020 Hb_002461_020 Hb_170077_010--Hb_002461_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.87932 18.2942 13.7727 8.21365 7.98625 5.68193
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.73159 3.94907 6.65185 8.6921 9.17217

CAGE analysis