Hb_009302_030

Information

Type -
Description -
Location Contig9302: 15614-20737
Sequence    

Annotation

kegg
ID rcu:RCOM_1176340
description hypothetical protein
nr
ID XP_002517986.1
description hypothetical protein RCOM_1176340 [Ricinus communis]
swissprot
ID Q9SZ67
description Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1
trembl
ID B9RW67
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176340 PE=4 SV=1
Gene Ontology
ID GO:0005515
description tmv resistance protein n-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_62830: 18179-19503 , PASA_asmbl_62831: 18267-18782 , PASA_asmbl_62832: 18865-19281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009302_030 0.0 - - hypothetical protein RCOM_1176340 [Ricinus communis]
2 Hb_003939_060 0.0554559779 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000645_130 0.056491001 - - PREDICTED: bromodomain and WD repeat-containing protein 3 [Jatropha curcas]
4 Hb_011249_060 0.0614269679 - - hypothetical protein POPTR_0018s12600g [Populus trichocarpa]
5 Hb_000703_200 0.0643202705 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
6 Hb_001534_210 0.0664365107 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
7 Hb_005834_040 0.0673017069 - - PREDICTED: cation-chloride cotransporter 1 [Jatropha curcas]
8 Hb_004899_040 0.0691165816 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]
9 Hb_000110_350 0.0695552352 - - PREDICTED: ubiquitin receptor RAD23c-like isoform X2 [Gossypium raimondii]
10 Hb_004659_090 0.0700147786 - - PREDICTED: uncharacterized protein LOC105629935 [Jatropha curcas]
11 Hb_000189_630 0.0724997856 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
12 Hb_001221_090 0.0733489148 - - PREDICTED: uncharacterized protein LOC105640211 isoform X1 [Jatropha curcas]
13 Hb_003929_210 0.0746989153 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_000579_010 0.075525838 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
15 Hb_000703_130 0.0764482438 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
16 Hb_000445_060 0.0764990237 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]
17 Hb_005765_040 0.0766787951 - - transcription elongation factor s-II, putative [Ricinus communis]
18 Hb_004236_010 0.0776712132 - - PREDICTED: probable mitochondrial-processing peptidase subunit beta [Jatropha curcas]
19 Hb_000373_170 0.0776798745 - - PREDICTED: exocyst complex component SEC5A-like [Jatropha curcas]
20 Hb_170077_010 0.077730339 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD14 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009302_030 Hb_009302_030 Hb_003939_060 Hb_003939_060 Hb_009302_030--Hb_003939_060 Hb_000645_130 Hb_000645_130 Hb_009302_030--Hb_000645_130 Hb_011249_060 Hb_011249_060 Hb_009302_030--Hb_011249_060 Hb_000703_200 Hb_000703_200 Hb_009302_030--Hb_000703_200 Hb_001534_210 Hb_001534_210 Hb_009302_030--Hb_001534_210 Hb_005834_040 Hb_005834_040 Hb_009302_030--Hb_005834_040 Hb_003929_210 Hb_003929_210 Hb_003939_060--Hb_003929_210 Hb_000110_350 Hb_000110_350 Hb_003939_060--Hb_000110_350 Hb_000996_020 Hb_000996_020 Hb_003939_060--Hb_000996_020 Hb_001904_030 Hb_001904_030 Hb_003939_060--Hb_001904_030 Hb_002007_110 Hb_002007_110 Hb_003939_060--Hb_002007_110 Hb_000958_050 Hb_000958_050 Hb_000645_130--Hb_000958_050 Hb_004659_090 Hb_004659_090 Hb_000645_130--Hb_004659_090 Hb_000645_130--Hb_003939_060 Hb_000500_300 Hb_000500_300 Hb_000645_130--Hb_000500_300 Hb_000806_030 Hb_000806_030 Hb_000645_130--Hb_000806_030 Hb_001427_150 Hb_001427_150 Hb_011249_060--Hb_001427_150 Hb_004899_040 Hb_004899_040 Hb_011249_060--Hb_004899_040 Hb_009486_160 Hb_009486_160 Hb_011249_060--Hb_009486_160 Hb_002903_140 Hb_002903_140 Hb_011249_060--Hb_002903_140 Hb_015183_100 Hb_015183_100 Hb_011249_060--Hb_015183_100 Hb_000024_040 Hb_000024_040 Hb_000703_200--Hb_000024_040 Hb_007426_060 Hb_007426_060 Hb_000703_200--Hb_007426_060 Hb_001545_150 Hb_001545_150 Hb_000703_200--Hb_001545_150 Hb_001723_010 Hb_001723_010 Hb_000703_200--Hb_001723_010 Hb_004517_020 Hb_004517_020 Hb_000703_200--Hb_004517_020 Hb_004032_230 Hb_004032_230 Hb_001534_210--Hb_004032_230 Hb_001534_210--Hb_007426_060 Hb_003849_140 Hb_003849_140 Hb_001534_210--Hb_003849_140 Hb_000099_040 Hb_000099_040 Hb_001534_210--Hb_000099_040 Hb_001231_090 Hb_001231_090 Hb_001534_210--Hb_001231_090 Hb_000189_630 Hb_000189_630 Hb_005834_040--Hb_000189_630 Hb_005834_040--Hb_000110_350 Hb_005834_040--Hb_004517_020 Hb_000445_060 Hb_000445_060 Hb_005834_040--Hb_000445_060 Hb_170077_010 Hb_170077_010 Hb_005834_040--Hb_170077_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35914 6.98109 3.85852 2.56474 2.57578 2.37804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.24245 1.5364 1.84744 2.98257 3.7238

CAGE analysis