Hb_001545_150

Information

Type transcription factor
Description TF Family: NAC
Location Contig1545: 185175-189239
Sequence    

Annotation

kegg
ID pop:POPTR_0002s06210g
description POPTRDRAFT_551262; hypothetical protein
nr
ID XP_012073984.1
description PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
swissprot
ID Q9XIC5
description NAC domain-containing protein 17 OS=Arabidopsis thaliana GN=NAC017 PE=2 SV=1
trembl
ID R4NHR3
description NAC transcription factor 049 OS=Jatropha curcas GN=JCGZ_08899 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13372: 184900-189202
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001545_150 0.0 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
2 Hb_000479_070 0.0446589186 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
3 Hb_001089_050 0.0506533758 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
4 Hb_031042_050 0.0551855931 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
5 Hb_000402_230 0.0560580485 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
6 Hb_003918_030 0.0571042092 - - PREDICTED: oxysterol-binding protein-related protein 1C-like isoform X1 [Jatropha curcas]
7 Hb_001279_120 0.057127796 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
8 Hb_001473_110 0.057287998 - - PREDICTED: ankyrin repeat domain-containing protein 13C-like [Jatropha curcas]
9 Hb_000809_170 0.0600015561 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein 1 homolog isoform X1 [Jatropha curcas]
10 Hb_003866_080 0.0616759474 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
11 Hb_002542_130 0.0638628565 transcription factor TF Family: HB Homeobox protein LUMINIDEPENDENS, putative [Ricinus communis]
12 Hb_003398_080 0.0649630623 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
13 Hb_000069_470 0.0660166324 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
14 Hb_000363_120 0.0662175618 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
15 Hb_000008_240 0.0665408726 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005188_040 0.0678307352 - - PREDICTED: protein furry homolog-like [Nicotiana sylvestris]
17 Hb_000069_130 0.0682302394 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
18 Hb_000094_090 0.0693618713 - - PREDICTED: DUF21 domain-containing protein At1g47330 isoform X1 [Jatropha curcas]
19 Hb_000703_200 0.0708480258 - - PREDICTED: ATP-dependent RNA helicase DHX36-like isoform X1 [Jatropha curcas]
20 Hb_029977_040 0.0712772406 - - PREDICTED: uncharacterized protein LOC105640155 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_001545_150 Hb_001545_150 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_001089_050 Hb_001089_050 Hb_001545_150--Hb_001089_050 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_000402_230 Hb_000402_230 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_001473_110 Hb_001473_110 Hb_000479_070--Hb_001473_110 Hb_000479_070--Hb_003918_030 Hb_000479_070--Hb_031042_050 Hb_000479_070--Hb_001279_120 Hb_001488_180 Hb_001488_180 Hb_000479_070--Hb_001488_180 Hb_003866_080 Hb_003866_080 Hb_001089_050--Hb_003866_080 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_004143_100 Hb_004143_100 Hb_001089_050--Hb_004143_100 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_000028_130 Hb_000028_130 Hb_031042_050--Hb_000028_130 Hb_001322_130 Hb_001322_130 Hb_031042_050--Hb_001322_130 Hb_000069_470 Hb_000069_470 Hb_031042_050--Hb_000069_470 Hb_002253_080 Hb_002253_080 Hb_031042_050--Hb_002253_080 Hb_004410_120 Hb_004410_120 Hb_031042_050--Hb_004410_120 Hb_000402_230--Hb_004143_100 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_000402_230--Hb_003866_080 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_003918_030--Hb_001473_110 Hb_003929_210 Hb_003929_210 Hb_003918_030--Hb_003929_210 Hb_003939_060 Hb_003939_060 Hb_003918_030--Hb_003939_060 Hb_000110_350 Hb_000110_350 Hb_003918_030--Hb_000110_350 Hb_000099_040 Hb_000099_040 Hb_001279_120--Hb_000099_040 Hb_002329_020 Hb_002329_020 Hb_001279_120--Hb_002329_020 Hb_009150_020 Hb_009150_020 Hb_001279_120--Hb_009150_020 Hb_002085_030 Hb_002085_030 Hb_001279_120--Hb_002085_030 Hb_012194_030 Hb_012194_030 Hb_001279_120--Hb_012194_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7428 65.9772 31.5288 34.6072 28.4116 27.8249
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3015 22.1262 25.7706 27.9621 33.3825

CAGE analysis