Hb_001089_050

Information

Type transcription factor
Description TF Family: ARID
Location Contig1089: 29094-37082
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13780g
description hypothetical protein
nr
ID XP_012077118.1
description PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
swissprot
ID Q6NQ79
description AT-rich interactive domain-containing protein 4 OS=Arabidopsis thaliana GN=ARID4 PE=2 SV=1
trembl
ID A0A067KG32
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07539 PE=4 SV=1
Gene Ontology
ID GO:0003677
description at-rich interactive domain-containing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02702: 29094-37157
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001089_050 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
2 Hb_003866_080 0.0336894892 - - PREDICTED: uncharacterized protein LOC105639150 [Jatropha curcas]
3 Hb_000402_230 0.0442840039 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
4 Hb_000861_080 0.0490578084 - - PREDICTED: protein ELC-like [Jatropha curcas]
5 Hb_001545_150 0.0506533758 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105635527 [Jatropha curcas]
6 Hb_004143_100 0.0547095922 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001716_020 0.0557058086 - - hydrolase, putative [Ricinus communis]
8 Hb_002492_010 0.0564011205 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
9 Hb_000087_060 0.0572533148 - - protein transporter, putative [Ricinus communis]
10 Hb_000614_210 0.0596849956 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
11 Hb_079326_020 0.0616985351 - - conserved hypothetical protein [Ricinus communis]
12 Hb_031042_050 0.0625731661 - - PREDICTED: protein transport protein SEC16B homolog [Jatropha curcas]
13 Hb_001195_530 0.0640673234 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002253_080 0.0642102544 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
15 Hb_008253_020 0.0649245787 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform-like [Jatropha curcas]
16 Hb_000069_130 0.065831039 - - PREDICTED: uncharacterized protein LOC105642829 isoform X1 [Jatropha curcas]
17 Hb_002205_250 0.0659377991 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
18 Hb_001767_140 0.0660501987 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
19 Hb_001279_120 0.0660768255 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Jatropha curcas]
20 Hb_003835_070 0.0662506882 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001089_050 Hb_001089_050 Hb_003866_080 Hb_003866_080 Hb_001089_050--Hb_003866_080 Hb_000402_230 Hb_000402_230 Hb_001089_050--Hb_000402_230 Hb_000861_080 Hb_000861_080 Hb_001089_050--Hb_000861_080 Hb_001545_150 Hb_001545_150 Hb_001089_050--Hb_001545_150 Hb_004143_100 Hb_004143_100 Hb_001089_050--Hb_004143_100 Hb_001716_020 Hb_001716_020 Hb_001089_050--Hb_001716_020 Hb_003866_080--Hb_000402_230 Hb_003866_080--Hb_004143_100 Hb_001767_140 Hb_001767_140 Hb_003866_080--Hb_001767_140 Hb_002085_030 Hb_002085_030 Hb_003866_080--Hb_002085_030 Hb_002492_010 Hb_002492_010 Hb_003866_080--Hb_002492_010 Hb_000402_230--Hb_004143_100 Hb_000009_500 Hb_000009_500 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_011849_040 Hb_011849_040 Hb_000402_230--Hb_011849_040 Hb_000803_070 Hb_000803_070 Hb_000861_080--Hb_000803_070 Hb_003398_080 Hb_003398_080 Hb_000861_080--Hb_003398_080 Hb_001195_530 Hb_001195_530 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_020831_030 Hb_020831_030 Hb_000861_080--Hb_020831_030 Hb_000479_070 Hb_000479_070 Hb_001545_150--Hb_000479_070 Hb_031042_050 Hb_031042_050 Hb_001545_150--Hb_031042_050 Hb_001545_150--Hb_000402_230 Hb_003918_030 Hb_003918_030 Hb_001545_150--Hb_003918_030 Hb_001279_120 Hb_001279_120 Hb_001545_150--Hb_001279_120 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_004143_100--Hb_002492_010 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_105105_010 Hb_105105_010 Hb_001716_020--Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_001716_020--Hb_002205_250 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.1607 22.1696 12.5749 12.9569 11.7585 12.7591
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.77108 10.7781 9.70463 10.7391 11.6927

CAGE analysis