Hb_000803_070

Information

Type -
Description -
Location Contig803: 130987-133737
Sequence    

Annotation

kegg
ID rcu:RCOM_1578640
description hypothetical protein
nr
ID XP_012090030.1
description PREDICTED: protein TRAUCO [Jatropha curcas]
swissprot
ID Q9C8J7
description Protein TRAUCO OS=Arabidopsis thaliana GN=TRO PE=1 SV=1
trembl
ID A0A067JH28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25944 PE=4 SV=1
Gene Ontology
ID GO:0048188
description set1 ash2 histone methyltransferase complex subunit ash2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58880: 131862-133524
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_070 0.0 - - PREDICTED: protein TRAUCO [Jatropha curcas]
2 Hb_000861_080 0.051146209 - - PREDICTED: protein ELC-like [Jatropha curcas]
3 Hb_001728_050 0.0527065714 - - PREDICTED: E3 ubiquitin-protein ligase RBBP6-like [Jatropha curcas]
4 Hb_032264_060 0.0575948989 - - hypothetical protein JCGZ_02506 [Jatropha curcas]
5 Hb_003929_280 0.0626942493 transcription factor TF Family: CAMTA calmodulin-binding transcription activator (camta), plants, putative [Ricinus communis]
6 Hb_001751_140 0.0632721186 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
7 Hb_003927_040 0.0668477088 - - CCR4-NOT transcription complex subunit, putative [Ricinus communis]
8 Hb_000331_680 0.0682089994 - - Protein bem46, putative [Ricinus communis]
9 Hb_005653_090 0.0683689625 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
10 Hb_012194_030 0.0696267393 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
11 Hb_000479_220 0.0700421101 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
12 Hb_000025_730 0.0703019939 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
13 Hb_001754_030 0.0712080896 - - PREDICTED: ubiquitin-like-specific protease ESD4 [Jatropha curcas]
14 Hb_000886_050 0.0721369331 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
15 Hb_002843_120 0.0722706333 - - PREDICTED: uncharacterized protein LOC105645113 isoform X1 [Jatropha curcas]
16 Hb_002267_140 0.0734142892 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
17 Hb_030827_020 0.0736515471 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
18 Hb_138596_010 0.0736831729 - - PREDICTED: BTB/POZ domain-containing protein At2g13690 [Jatropha curcas]
19 Hb_000243_250 0.0738259669 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
20 Hb_000866_460 0.0740084854 - - PREDICTED: acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_000803_070 Hb_000803_070 Hb_000861_080 Hb_000861_080 Hb_000803_070--Hb_000861_080 Hb_001728_050 Hb_001728_050 Hb_000803_070--Hb_001728_050 Hb_032264_060 Hb_032264_060 Hb_000803_070--Hb_032264_060 Hb_003929_280 Hb_003929_280 Hb_000803_070--Hb_003929_280 Hb_001751_140 Hb_001751_140 Hb_000803_070--Hb_001751_140 Hb_003927_040 Hb_003927_040 Hb_000803_070--Hb_003927_040 Hb_001089_050 Hb_001089_050 Hb_000861_080--Hb_001089_050 Hb_003398_080 Hb_003398_080 Hb_000861_080--Hb_003398_080 Hb_001195_530 Hb_001195_530 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_020831_030 Hb_020831_030 Hb_000861_080--Hb_020831_030 Hb_004357_020 Hb_004357_020 Hb_001728_050--Hb_004357_020 Hb_001728_050--Hb_001751_140 Hb_001247_130 Hb_001247_130 Hb_001728_050--Hb_001247_130 Hb_001728_050--Hb_003927_040 Hb_001728_050--Hb_032264_060 Hb_003633_070 Hb_003633_070 Hb_032264_060--Hb_003633_070 Hb_032264_060--Hb_003927_040 Hb_001140_030 Hb_001140_030 Hb_032264_060--Hb_001140_030 Hb_032264_060--Hb_001751_140 Hb_001754_030 Hb_001754_030 Hb_032264_060--Hb_001754_030 Hb_004236_050 Hb_004236_050 Hb_003929_280--Hb_004236_050 Hb_004837_180 Hb_004837_180 Hb_003929_280--Hb_004837_180 Hb_003929_280--Hb_003927_040 Hb_012384_030 Hb_012384_030 Hb_003929_280--Hb_012384_030 Hb_002217_110 Hb_002217_110 Hb_003929_280--Hb_002217_110 Hb_001635_040 Hb_001635_040 Hb_001751_140--Hb_001635_040 Hb_001751_140--Hb_003927_040 Hb_008568_020 Hb_008568_020 Hb_001751_140--Hb_008568_020 Hb_000076_160 Hb_000076_160 Hb_001751_140--Hb_000076_160 Hb_000645_170 Hb_000645_170 Hb_003927_040--Hb_000645_170 Hb_060094_020 Hb_060094_020 Hb_003927_040--Hb_060094_020 Hb_003927_040--Hb_008568_020 Hb_140049_040 Hb_140049_040 Hb_003927_040--Hb_140049_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.4723 27.8543 20.4918 14.2325 17.5844 15.9389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.0937 15.0434 16.9553 13.3734 14.8386

CAGE analysis