Hb_003120_080

Information

Type -
Description -
Location Contig3120: 33010-38115
Sequence    

Annotation

kegg
ID rcu:RCOM_1598670
description zinc finger protein, putative
nr
ID XP_012073754.1
description PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID E6NTZ2
description JHL20J20.9 protein OS=Jatropha curcas GN=JHL20J20.9 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33006: 33403-38107
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003120_080 0.0 - - PREDICTED: COPII coat assembly protein SEC16 isoform X1 [Jatropha curcas]
2 Hb_001377_160 0.0569427374 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
3 Hb_004586_290 0.0569668644 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
4 Hb_004143_100 0.0569763214 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000402_230 0.0621614135 - - PREDICTED: sorting nexin 2A-like isoform X1 [Jatropha curcas]
6 Hb_011849_040 0.0635545344 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000009_500 0.0655532145 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
8 Hb_003943_010 0.066844866 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000614_210 0.0727378924 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
10 Hb_002026_210 0.0768874875 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
11 Hb_004109_230 0.0783482814 - - heat shock protein binding protein, putative [Ricinus communis]
12 Hb_001318_020 0.0796754934 - - HAT dimerization domain-containing protein isoform 2 [Theobroma cacao]
13 Hb_000789_250 0.0804291472 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]
14 Hb_004668_060 0.0807312491 - - PREDICTED: probable apyrase 6 isoform X1 [Jatropha curcas]
15 Hb_004128_130 0.0812377413 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
16 Hb_001668_010 0.0814221208 - - PREDICTED: RNA-binding protein with multiple splicing [Jatropha curcas]
17 Hb_000862_040 0.0818022616 - - ara4-interacting protein, putative [Ricinus communis]
18 Hb_007083_030 0.0822868475 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
19 Hb_011618_090 0.0823998334 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
20 Hb_003835_070 0.0824250331 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003120_080 Hb_003120_080 Hb_001377_160 Hb_001377_160 Hb_003120_080--Hb_001377_160 Hb_004586_290 Hb_004586_290 Hb_003120_080--Hb_004586_290 Hb_004143_100 Hb_004143_100 Hb_003120_080--Hb_004143_100 Hb_000402_230 Hb_000402_230 Hb_003120_080--Hb_000402_230 Hb_011849_040 Hb_011849_040 Hb_003120_080--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_003120_080--Hb_000009_500 Hb_003943_010 Hb_003943_010 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_003498_120 Hb_003498_120 Hb_001377_160--Hb_003498_120 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_005568_040 Hb_005568_040 Hb_004586_290--Hb_005568_040 Hb_001628_070 Hb_001628_070 Hb_004586_290--Hb_001628_070 Hb_005542_140 Hb_005542_140 Hb_004586_290--Hb_005542_140 Hb_004586_290--Hb_000402_230 Hb_000025_280 Hb_000025_280 Hb_004586_290--Hb_000025_280 Hb_004143_100--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_001089_050 Hb_001089_050 Hb_004143_100--Hb_001089_050 Hb_002492_010 Hb_002492_010 Hb_004143_100--Hb_002492_010 Hb_000402_230--Hb_001089_050 Hb_000402_230--Hb_000009_500 Hb_008253_020 Hb_008253_020 Hb_000402_230--Hb_008253_020 Hb_000402_230--Hb_003866_080 Hb_000402_230--Hb_011849_040 Hb_011849_040--Hb_000009_500 Hb_079326_020 Hb_079326_020 Hb_011849_040--Hb_079326_020 Hb_002026_210 Hb_002026_210 Hb_011849_040--Hb_002026_210 Hb_011849_040--Hb_004143_100 Hb_000614_210 Hb_000614_210 Hb_011849_040--Hb_000614_210 Hb_000009_500--Hb_079326_020 Hb_000009_500--Hb_002026_210 Hb_004109_230 Hb_004109_230 Hb_000009_500--Hb_004109_230 Hb_000009_500--Hb_000614_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3352 64.8733 32.6317 47.2561 41.3884 38.151
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7383 23.7883 28.5299 47.5362 33.9106

CAGE analysis