Hb_003498_120

Information

Type -
Description -
Location Contig3498: 223198-238804
Sequence    

Annotation

kegg
ID pop:POPTR_0015s12430g
description hypothetical protein
nr
ID XP_002321788.2
description hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9ICG1
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0015s12430g PE=4 SV=2
Gene Ontology
ID GO:0005789
description protein root hair defective 3 homolog 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36381: 223227-265974 , PASA_asmbl_36382: 224332-224770
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003498_120 0.0 - - hypothetical protein POPTR_0015s12430g, partial [Populus trichocarpa]
2 Hb_003177_060 0.0594675034 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X1 [Jatropha curcas]
3 Hb_001377_160 0.0649616192 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
4 Hb_000505_020 0.065025457 - - PREDICTED: protein S-acyltransferase 24 [Jatropha curcas]
5 Hb_001235_140 0.0692019865 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
6 Hb_001821_090 0.0758627646 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 2 [Jatropha curcas]
7 Hb_005143_030 0.0768908277 - - PREDICTED: uncharacterized protein LOC105638843 [Jatropha curcas]
8 Hb_007123_030 0.07868632 - - PREDICTED: uncharacterized protein LOC105634056 isoform X3 [Jatropha curcas]
9 Hb_000740_100 0.0793161985 - - calpain, putative [Ricinus communis]
10 Hb_007426_130 0.0805845469 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_028487_010 0.0807135046 - - PREDICTED: mediator of RNA polymerase II transcription subunit 23 isoform X2 [Jatropha curcas]
12 Hb_007083_030 0.0818718201 - - Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis]
13 Hb_002815_030 0.0820507651 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
14 Hb_003927_010 0.0821418779 - - Zinc-binding dehydrogenase family protein isoform 1 [Theobroma cacao]
15 Hb_006355_090 0.082223338 desease resistance Gene Name: AAA PREDICTED: 26S proteasome regulatory subunit 4 homolog A [Jatropha curcas]
16 Hb_000579_230 0.0827518196 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
17 Hb_010661_050 0.0848695087 - - PREDICTED: phosphoenolpyruvate carboxykinase [ATP]-like [Fragaria vesca subsp. vesca]
18 Hb_104061_020 0.0849220971 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
19 Hb_000369_130 0.0850513519 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
20 Hb_002909_090 0.0851477207 - - PREDICTED: 4-alpha-glucanotransferase DPE2 [Jatropha curcas]

Gene co-expression network

sample Hb_003498_120 Hb_003498_120 Hb_003177_060 Hb_003177_060 Hb_003498_120--Hb_003177_060 Hb_001377_160 Hb_001377_160 Hb_003498_120--Hb_001377_160 Hb_000505_020 Hb_000505_020 Hb_003498_120--Hb_000505_020 Hb_001235_140 Hb_001235_140 Hb_003498_120--Hb_001235_140 Hb_001821_090 Hb_001821_090 Hb_003498_120--Hb_001821_090 Hb_005143_030 Hb_005143_030 Hb_003498_120--Hb_005143_030 Hb_007426_130 Hb_007426_130 Hb_003177_060--Hb_007426_130 Hb_003177_060--Hb_001821_090 Hb_000069_410 Hb_000069_410 Hb_003177_060--Hb_000069_410 Hb_012184_060 Hb_012184_060 Hb_003177_060--Hb_012184_060 Hb_000740_100 Hb_000740_100 Hb_003177_060--Hb_000740_100 Hb_003943_010 Hb_003943_010 Hb_001377_160--Hb_003943_010 Hb_004668_060 Hb_004668_060 Hb_001377_160--Hb_004668_060 Hb_003120_080 Hb_003120_080 Hb_001377_160--Hb_003120_080 Hb_000398_080 Hb_000398_080 Hb_001377_160--Hb_000398_080 Hb_000139_130 Hb_000139_130 Hb_001377_160--Hb_000139_130 Hb_000109_100 Hb_000109_100 Hb_000505_020--Hb_000109_100 Hb_010053_030 Hb_010053_030 Hb_000505_020--Hb_010053_030 Hb_104061_020 Hb_104061_020 Hb_000505_020--Hb_104061_020 Hb_002078_100 Hb_002078_100 Hb_000505_020--Hb_002078_100 Hb_000505_020--Hb_001235_140 Hb_001235_140--Hb_010053_030 Hb_007657_020 Hb_007657_020 Hb_001235_140--Hb_007657_020 Hb_001235_140--Hb_001377_160 Hb_002681_090 Hb_002681_090 Hb_001235_140--Hb_002681_090 Hb_000089_120 Hb_000089_120 Hb_001235_140--Hb_000089_120 Hb_001821_090--Hb_000069_410 Hb_009615_170 Hb_009615_170 Hb_001821_090--Hb_009615_170 Hb_002107_070 Hb_002107_070 Hb_001821_090--Hb_002107_070 Hb_028487_010 Hb_028487_010 Hb_001821_090--Hb_028487_010 Hb_003058_060 Hb_003058_060 Hb_001821_090--Hb_003058_060 Hb_000579_230 Hb_000579_230 Hb_001821_090--Hb_000579_230 Hb_001575_010 Hb_001575_010 Hb_005143_030--Hb_001575_010 Hb_005143_030--Hb_028487_010 Hb_005143_030--Hb_002107_070 Hb_000369_130 Hb_000369_130 Hb_005143_030--Hb_000369_130 Hb_005143_030--Hb_001821_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.6022 14.5412 6.38267 8.82939 11.2408 14.5156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.00931 4.41386 4.66724 16.1021 8.28094

CAGE analysis