Hb_002681_090

Information

Type -
Description -
Location Contig2681: 59782-70874
Sequence    

Annotation

kegg
ID pop:POPTR_0001s35520g
description POPTRDRAFT_797875; vesicle tethering family protein
nr
ID XP_012071873.1
description PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
swissprot
ID B0F9L4
description Golgin candidate 6 OS=Arabidopsis thaliana GN=GC6 PE=1 SV=2
trembl
ID A0A067LNG8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10240 PE=4 SV=1
Gene Ontology
ID GO:0000139
description golgin candidate 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002681_090 0.0 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
2 Hb_007657_020 0.0472851163 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
3 Hb_002311_290 0.0522075178 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
4 Hb_000603_030 0.0570506274 - - Ribonuclease III, putative [Ricinus communis]
5 Hb_000120_280 0.0646889924 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
6 Hb_002815_030 0.06514699 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
7 Hb_000170_090 0.065494593 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
8 Hb_000089_120 0.0666374968 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_001235_140 0.0676983724 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
10 Hb_000035_470 0.0678752207 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
11 Hb_000008_290 0.0690251376 - - PREDICTED: protein SAND [Jatropha curcas]
12 Hb_000398_080 0.0698443258 - - tip120, putative [Ricinus communis]
13 Hb_000227_220 0.0703506638 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
14 Hb_001040_100 0.0712472718 - - PREDICTED: general transcription factor IIH subunit 4 [Jatropha curcas]
15 Hb_000302_310 0.071816803 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
16 Hb_000617_180 0.0718385927 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_004267_040 0.0730117845 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
18 Hb_133702_030 0.0746079029 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
19 Hb_000011_100 0.0750103742 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
20 Hb_001860_030 0.0752039893 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_002681_090 Hb_002681_090 Hb_007657_020 Hb_007657_020 Hb_002681_090--Hb_007657_020 Hb_002311_290 Hb_002311_290 Hb_002681_090--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090 Hb_000398_080 Hb_000398_080 Hb_007657_020--Hb_000398_080 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_007657_020--Hb_002311_290 Hb_007657_020--Hb_000603_030 Hb_000089_120 Hb_000089_120 Hb_007657_020--Hb_000089_120 Hb_002311_290--Hb_000603_030 Hb_001062_010 Hb_001062_010 Hb_002311_290--Hb_001062_010 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_000120_280--Hb_004267_040 Hb_000011_100 Hb_000011_100 Hb_000120_280--Hb_000011_100 Hb_000477_050 Hb_000477_050 Hb_000120_280--Hb_000477_050 Hb_183510_020 Hb_183510_020 Hb_000120_280--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000120_280--Hb_001009_320 Hb_001343_040 Hb_001343_040 Hb_002815_030--Hb_001343_040 Hb_000008_290 Hb_000008_290 Hb_002815_030--Hb_000008_290 Hb_000579_230 Hb_000579_230 Hb_002815_030--Hb_000579_230 Hb_012395_140 Hb_012395_140 Hb_002815_030--Hb_012395_140 Hb_000395_070 Hb_000395_070 Hb_002815_030--Hb_000395_070 Hb_000592_030 Hb_000592_030 Hb_002815_030--Hb_000592_030 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_001377_310 Hb_001377_310 Hb_000170_090--Hb_001377_310 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.49707 7.51076 7.9898 9.46958 9.47556 10.5911
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.00356 6.04646 4.85765 12.5869 7.96915

CAGE analysis