Hb_007657_020

Information

Type -
Description -
Location Contig7657: 33123-36628
Sequence    

Annotation

kegg
ID pop:POPTR_0001s40730g
description prenylated rab acceptor family protein
nr
ID XP_012076415.1
description PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
swissprot
ID Q8LFP1
description PRA1 family protein H OS=Arabidopsis thaliana GN=PRA1H PE=2 SV=1
trembl
ID A0A067LBL6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15315 PE=4 SV=1
Gene Ontology
ID GO:0006914
description pra1 family protein h

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007657_020 0.0 - - PREDICTED: PRA1 family protein H isoform X1 [Jatropha curcas]
2 Hb_000398_080 0.0461781073 - - tip120, putative [Ricinus communis]
3 Hb_002681_090 0.0472851163 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
4 Hb_000261_240 0.0474741017 - - RecName: Full=Elongation factor 1-alpha; Short=EF-1-alpha [Manihot esculenta]
5 Hb_002311_290 0.0488065064 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
6 Hb_000603_030 0.056385668 - - Ribonuclease III, putative [Ricinus communis]
7 Hb_000089_120 0.0628829125 - - WD-repeat protein, putative [Ricinus communis]
8 Hb_000120_280 0.065078589 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
9 Hb_000227_220 0.0666297724 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
10 Hb_001235_140 0.0669262505 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
11 Hb_004267_040 0.0704099694 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
12 Hb_000011_100 0.0704977879 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]
13 Hb_133702_030 0.0707947349 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
14 Hb_000182_040 0.0707987788 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 24 [Jatropha curcas]
15 Hb_000170_090 0.0716680371 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
16 Hb_001377_160 0.0724170299 - - PREDICTED: protein SDE2 homolog [Jatropha curcas]
17 Hb_001085_110 0.0738260177 - - T6D22.2 [Arabidopsis thaliana]
18 Hb_004109_370 0.0749798487 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
19 Hb_005588_090 0.0752418763 - - hypothetical protein CICLE_v10003480mg [Citrus clementina]
20 Hb_000163_220 0.0755320563 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]

Gene co-expression network

sample Hb_007657_020 Hb_007657_020 Hb_000398_080 Hb_000398_080 Hb_007657_020--Hb_000398_080 Hb_002681_090 Hb_002681_090 Hb_007657_020--Hb_002681_090 Hb_000261_240 Hb_000261_240 Hb_007657_020--Hb_000261_240 Hb_002311_290 Hb_002311_290 Hb_007657_020--Hb_002311_290 Hb_000603_030 Hb_000603_030 Hb_007657_020--Hb_000603_030 Hb_000089_120 Hb_000089_120 Hb_007657_020--Hb_000089_120 Hb_002805_190 Hb_002805_190 Hb_000398_080--Hb_002805_190 Hb_000011_100 Hb_000011_100 Hb_000398_080--Hb_000011_100 Hb_000398_080--Hb_000603_030 Hb_004267_040 Hb_004267_040 Hb_000398_080--Hb_004267_040 Hb_000563_130 Hb_000563_130 Hb_000398_080--Hb_000563_130 Hb_002681_090--Hb_002311_290 Hb_002681_090--Hb_000603_030 Hb_000120_280 Hb_000120_280 Hb_002681_090--Hb_000120_280 Hb_002815_030 Hb_002815_030 Hb_002681_090--Hb_002815_030 Hb_000170_090 Hb_000170_090 Hb_002681_090--Hb_000170_090 Hb_000261_240--Hb_000089_120 Hb_000261_240--Hb_002311_290 Hb_000261_240--Hb_000398_080 Hb_005460_050 Hb_005460_050 Hb_000261_240--Hb_005460_050 Hb_005723_020 Hb_005723_020 Hb_000261_240--Hb_005723_020 Hb_002311_290--Hb_000603_030 Hb_001062_010 Hb_001062_010 Hb_002311_290--Hb_001062_010 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000603_030--Hb_000563_130 Hb_000603_030--Hb_004267_040 Hb_116349_070 Hb_116349_070 Hb_000089_120--Hb_116349_070 Hb_005588_090 Hb_005588_090 Hb_000089_120--Hb_005588_090 Hb_002784_020 Hb_002784_020 Hb_000089_120--Hb_002784_020 Hb_000089_120--Hb_000398_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.22062 5.6948 5.46941 5.66284 5.99365 6.79682
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.8075 3.59367 2.55763 7.38275 4.45733

CAGE analysis