Hb_002631_170

Information

Type -
Description -
Location Contig2631: 141784-145280
Sequence    

Annotation

kegg
ID rcu:RCOM_1574630
description dead box ATP-dependent RNA helicase, putative
nr
ID XP_012087359.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
swissprot
ID Q9SA27
description DEAD-box ATP-dependent RNA helicase 36 OS=Arabidopsis thaliana GN=RH36 PE=2 SV=1
trembl
ID A0A067JM55
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22606 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 36

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27467: 144037-144533 , PASA_asmbl_27468: 142189-145259
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002631_170 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
2 Hb_002311_290 0.0645424246 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
3 Hb_009486_180 0.0726925692 - - unknown [Glycine max]
4 Hb_001062_010 0.0729128808 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
5 Hb_001935_110 0.0743123935 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
6 Hb_000603_030 0.0762010905 - - Ribonuclease III, putative [Ricinus communis]
7 Hb_002092_130 0.0769675507 - - PREDICTED: protein CASP-like [Oryza brachyantha]
8 Hb_007632_240 0.0796156533 - - transporter, putative [Ricinus communis]
9 Hb_001235_140 0.0802677871 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
10 Hb_025477_040 0.0804441374 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
11 Hb_000923_080 0.0823953361 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
12 Hb_002681_090 0.0832195505 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
13 Hb_000740_100 0.0832647594 - - calpain, putative [Ricinus communis]
14 Hb_000900_030 0.0833842883 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
15 Hb_009175_020 0.0862898998 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
16 Hb_001623_480 0.0896540944 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 13 [Jatropha curcas]
17 Hb_000920_210 0.0898478159 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
18 Hb_104061_020 0.0901928636 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
19 Hb_002815_030 0.0907414163 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
20 Hb_171900_070 0.0911819271 - - -

Gene co-expression network

sample Hb_002631_170 Hb_002631_170 Hb_002311_290 Hb_002311_290 Hb_002631_170--Hb_002311_290 Hb_009486_180 Hb_009486_180 Hb_002631_170--Hb_009486_180 Hb_001062_010 Hb_001062_010 Hb_002631_170--Hb_001062_010 Hb_001935_110 Hb_001935_110 Hb_002631_170--Hb_001935_110 Hb_000603_030 Hb_000603_030 Hb_002631_170--Hb_000603_030 Hb_002092_130 Hb_002092_130 Hb_002631_170--Hb_002092_130 Hb_007657_020 Hb_007657_020 Hb_002311_290--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_002311_290--Hb_002681_090 Hb_002311_290--Hb_000603_030 Hb_002311_290--Hb_001062_010 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_009175_020 Hb_009175_020 Hb_009486_180--Hb_009175_020 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_000011_230 Hb_000011_230 Hb_009486_180--Hb_000011_230 Hb_009486_180--Hb_002311_290 Hb_009486_180--Hb_001062_010 Hb_001062_010--Hb_000900_030 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_001062_010--Hb_009175_020 Hb_012053_080 Hb_012053_080 Hb_001935_110--Hb_012053_080 Hb_019654_040 Hb_019654_040 Hb_001935_110--Hb_019654_040 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_000470_070 Hb_000470_070 Hb_001935_110--Hb_000470_070 Hb_002078_100 Hb_002078_100 Hb_001935_110--Hb_002078_100 Hb_000398_080 Hb_000398_080 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_000603_030--Hb_007657_020 Hb_000603_030--Hb_002681_090 Hb_000563_130 Hb_000563_130 Hb_000603_030--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_000603_030--Hb_004267_040 Hb_002301_300 Hb_002301_300 Hb_002092_130--Hb_002301_300 Hb_002092_130--Hb_001062_010 Hb_002092_130--Hb_000603_030 Hb_002092_130--Hb_002311_290 Hb_002092_130--Hb_004267_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.92164 7.14565 7.55403 6.96858 14.2168 13.5414
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.18178 5.77708 4.65918 15.2647 8.77113

CAGE analysis