Hb_019654_040

Information

Type -
Description -
Location Contig19654: 21125-26809
Sequence    

Annotation

kegg
ID rcu:RCOM_1599990
description hypothetical protein
nr
ID XP_012073699.1
description PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
swissprot
ID Q3MIT2
description Putative tRNA pseudouridine synthase Pus10 OS=Homo sapiens GN=PUS10 PE=1 SV=1
trembl
ID A0A067KKT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08142 PE=4 SV=1
Gene Ontology
ID GO:0003723
description trna pseudouridine synthase pus10

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19697: 21224-21932 , PASA_asmbl_19699: 23471-24878 , PASA_asmbl_19700: 25187-26160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019654_040 0.0 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
2 Hb_000470_070 0.0512319816 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
3 Hb_009296_010 0.0565215601 - - PREDICTED: eukaryotic peptide chain release factor GTP-binding subunit ERF3A isoform X3 [Jatropha curcas]
4 Hb_001935_110 0.0573921651 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
5 Hb_000648_100 0.0591607258 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
6 Hb_001488_200 0.0609885829 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
7 Hb_011930_080 0.0630143569 - - PREDICTED: uncharacterized protein LOC105649790 [Jatropha curcas]
8 Hb_003638_090 0.064610316 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
9 Hb_002078_100 0.0647103396 - - PREDICTED: mannosyl-oligosaccharide glucosidase GCS1-like [Jatropha curcas]
10 Hb_001427_190 0.0669390794 - - PREDICTED: histone acetyltransferase type B catalytic subunit [Jatropha curcas]
11 Hb_002684_040 0.0676450549 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
12 Hb_000777_050 0.0697927817 - - hypothetical protein CICLE_v10008422mg [Citrus clementina]
13 Hb_000109_210 0.0738998254 - - PREDICTED: threonine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_000138_140 0.0761073262 - - hypothetical protein B456_012G1014001, partial [Gossypium raimondii]
15 Hb_003549_090 0.0762674065 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
16 Hb_028872_070 0.0762793873 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
17 Hb_174821_010 0.0764831688 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 14 [Jatropha curcas]
18 Hb_027380_140 0.0779455881 - - PREDICTED: uncharacterized protein LOC105634023 isoform X1 [Jatropha curcas]
19 Hb_012053_080 0.0784757772 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_000208_210 0.0785281171 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]

Gene co-expression network

sample Hb_019654_040 Hb_019654_040 Hb_000470_070 Hb_000470_070 Hb_019654_040--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_019654_040--Hb_009296_010 Hb_001935_110 Hb_001935_110 Hb_019654_040--Hb_001935_110 Hb_000648_100 Hb_000648_100 Hb_019654_040--Hb_000648_100 Hb_001488_200 Hb_001488_200 Hb_019654_040--Hb_001488_200 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_002078_100 Hb_002078_100 Hb_000470_070--Hb_002078_100 Hb_174821_010 Hb_174821_010 Hb_000470_070--Hb_174821_010 Hb_000470_070--Hb_000648_100 Hb_000470_070--Hb_009296_010 Hb_001617_060 Hb_001617_060 Hb_000470_070--Hb_001617_060 Hb_009296_010--Hb_002078_100 Hb_027380_140 Hb_027380_140 Hb_009296_010--Hb_027380_140 Hb_012053_080 Hb_012053_080 Hb_009296_010--Hb_012053_080 Hb_009296_010--Hb_001935_110 Hb_001935_110--Hb_012053_080 Hb_001427_190 Hb_001427_190 Hb_001935_110--Hb_001427_190 Hb_000333_060 Hb_000333_060 Hb_001935_110--Hb_000333_060 Hb_001935_110--Hb_000470_070 Hb_001935_110--Hb_002078_100 Hb_000648_100--Hb_002078_100 Hb_001454_320 Hb_001454_320 Hb_000648_100--Hb_001454_320 Hb_000923_080 Hb_000923_080 Hb_000648_100--Hb_000923_080 Hb_001140_350 Hb_001140_350 Hb_000648_100--Hb_001140_350 Hb_006688_050 Hb_006688_050 Hb_001488_200--Hb_006688_050 Hb_003638_090 Hb_003638_090 Hb_001488_200--Hb_003638_090 Hb_010407_050 Hb_010407_050 Hb_001488_200--Hb_010407_050 Hb_002375_010 Hb_002375_010 Hb_001488_200--Hb_002375_010 Hb_000390_320 Hb_000390_320 Hb_001488_200--Hb_000390_320 Hb_011930_080--Hb_001427_190 Hb_002374_320 Hb_002374_320 Hb_011930_080--Hb_002374_320 Hb_011930_080--Hb_000648_100 Hb_011930_080--Hb_002078_100 Hb_002888_070 Hb_002888_070 Hb_011930_080--Hb_002888_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.58894 4.2575 5.65039 3.56786 5.93417 7.45313
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.02745 2.09895 3.35352 5.23949 3.13841

CAGE analysis