Hb_001488_200

Information

Type -
Description -
Location Contig1488: 132162-137956
Sequence    

Annotation

kegg
ID pop:POPTR_0017s12880g
description POPTRDRAFT_778605; hypothetical protein
nr
ID XP_012074923.1
description PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
swissprot
ID A7RHG8
description Ribosome biogenesis protein WDR12 homolog (Fragment) OS=Nematostella vectensis GN=v1g82024 PE=3 SV=1
trembl
ID A0A067KUV1
description Ribosome biogenesis protein WDR12 homolog OS=Jatropha curcas GN=JCGZ_09062 PE=3 SV=1
Gene Ontology
ID GO:0031981
description ribosome biogenesis protein wdr12 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001488_200 0.0 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
2 Hb_006688_050 0.0607447124 - - PREDICTED: cytochrome c oxidase assembly protein COX15 isoform X1 [Jatropha curcas]
3 Hb_019654_040 0.0609885829 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
4 Hb_003638_090 0.0619661131 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
5 Hb_010407_050 0.0633214955 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
6 Hb_002375_010 0.0707681336 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
7 Hb_000390_320 0.0762253419 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
8 Hb_000089_120 0.0791580978 - - WD-repeat protein, putative [Ricinus communis]
9 Hb_004209_020 0.079381447 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 51-like isoform X1 [Jatropha curcas]
10 Hb_002078_110 0.0796429955 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
11 Hb_005289_040 0.0807545902 - - poly(A) polymerase, putative [Ricinus communis]
12 Hb_000923_080 0.08176898 - - PREDICTED: eukaryotic translation initiation factor 2A [Jatropha curcas]
13 Hb_005965_030 0.0820240754 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
14 Hb_000935_010 0.0820891958 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
15 Hb_002805_190 0.082557024 - - spliceosome associated protein, putative [Ricinus communis]
16 Hb_000680_090 0.0830744734 - - Protein SEY1, putative [Ricinus communis]
17 Hb_004235_080 0.084255229 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
18 Hb_001935_110 0.0846761619 - - PREDICTED: T-complex protein 1 subunit alpha [Jatropha curcas]
19 Hb_002684_040 0.0847867824 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
20 Hb_001153_190 0.0851909661 - - PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]

Gene co-expression network

sample Hb_001488_200 Hb_001488_200 Hb_006688_050 Hb_006688_050 Hb_001488_200--Hb_006688_050 Hb_019654_040 Hb_019654_040 Hb_001488_200--Hb_019654_040 Hb_003638_090 Hb_003638_090 Hb_001488_200--Hb_003638_090 Hb_010407_050 Hb_010407_050 Hb_001488_200--Hb_010407_050 Hb_002375_010 Hb_002375_010 Hb_001488_200--Hb_002375_010 Hb_000390_320 Hb_000390_320 Hb_001488_200--Hb_000390_320 Hb_006688_050--Hb_010407_050 Hb_004994_010 Hb_004994_010 Hb_006688_050--Hb_004994_010 Hb_005965_030 Hb_005965_030 Hb_006688_050--Hb_005965_030 Hb_000928_220 Hb_000928_220 Hb_006688_050--Hb_000928_220 Hb_002078_110 Hb_002078_110 Hb_006688_050--Hb_002078_110 Hb_000470_070 Hb_000470_070 Hb_019654_040--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_019654_040--Hb_009296_010 Hb_001935_110 Hb_001935_110 Hb_019654_040--Hb_001935_110 Hb_000648_100 Hb_000648_100 Hb_019654_040--Hb_000648_100 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_005289_040 Hb_005289_040 Hb_003638_090--Hb_005289_040 Hb_003638_090--Hb_019654_040 Hb_002805_190 Hb_002805_190 Hb_003638_090--Hb_002805_190 Hb_002374_260 Hb_002374_260 Hb_003638_090--Hb_002374_260 Hb_003638_090--Hb_005965_030 Hb_010407_050--Hb_004994_010 Hb_000879_180 Hb_000879_180 Hb_010407_050--Hb_000879_180 Hb_003861_050 Hb_003861_050 Hb_010407_050--Hb_003861_050 Hb_001005_030 Hb_001005_030 Hb_010407_050--Hb_001005_030 Hb_002375_010--Hb_000390_320 Hb_004195_200 Hb_004195_200 Hb_002375_010--Hb_004195_200 Hb_000347_070 Hb_000347_070 Hb_002375_010--Hb_000347_070 Hb_007576_110 Hb_007576_110 Hb_002375_010--Hb_007576_110 Hb_000617_180 Hb_000617_180 Hb_002375_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_002375_010--Hb_002784_020 Hb_000680_090 Hb_000680_090 Hb_000390_320--Hb_000680_090 Hb_001195_320 Hb_001195_320 Hb_000390_320--Hb_001195_320 Hb_143629_110 Hb_143629_110 Hb_000390_320--Hb_143629_110 Hb_002329_040 Hb_002329_040 Hb_000390_320--Hb_002329_040 Hb_123903_010 Hb_123903_010 Hb_000390_320--Hb_123903_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.7092 4.93795 6.39577 3.44724 6.46976 6.54973
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.85028 3.01139 4.15108 5.57519 2.78344

CAGE analysis