Hb_000879_180

Information

Type -
Description -
Location Contig879: 216099-222533
Sequence    

Annotation

kegg
ID rcu:RCOM_1587330
description XPA-binding protein, putative
nr
ID XP_002510089.1
description XPA-binding protein, putative [Ricinus communis]
swissprot
ID Q6PUR6
description GPN-loop GTPase 2 OS=Danio rerio GN=gpn2 PE=2 SV=1
trembl
ID B9R6Z6
description XPA-binding protein, putative OS=Ricinus communis GN=RCOM_1587330 PE=4 SV=1
Gene Ontology
ID GO:0005874
description gpn-loop gtpase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61354: 216665-216863 , PASA_asmbl_61355: 216911-222498 , PASA_asmbl_61356: 216911-222498 , PASA_asmbl_61358: 221447-221637 , PASA_asmbl_61359: 220703-222493 , PASA_asmbl_61360: 221026-221306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000879_180 0.0 - - XPA-binding protein, putative [Ricinus communis]
2 Hb_000096_120 0.0655577175 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
3 Hb_000567_190 0.0662959257 - - PREDICTED: protein SCAR3 isoform X2 [Jatropha curcas]
4 Hb_010407_050 0.0665968054 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
5 Hb_001377_310 0.0728063061 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
6 Hb_012506_030 0.0732387857 - - AP-2 complex subunit alpha, putative [Ricinus communis]
7 Hb_004096_180 0.0742308967 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
8 Hb_001635_040 0.0752265346 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]
9 Hb_003861_050 0.0763602461 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
10 Hb_005460_050 0.0766748067 - - COR413-PM2, putative [Ricinus communis]
11 Hb_000959_230 0.07722415 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
12 Hb_006588_070 0.0777232904 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
13 Hb_004586_060 0.0777860907 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
14 Hb_000373_080 0.0787953 - - PREDICTED: serine decarboxylase [Jatropha curcas]
15 Hb_000317_510 0.078806918 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
16 Hb_001804_110 0.0792988598 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
17 Hb_010381_090 0.080096883 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
18 Hb_000239_060 0.0802580276 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000359_040 0.0807438423 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002872_030 0.0808179489 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]

Gene co-expression network

sample Hb_000879_180 Hb_000879_180 Hb_000096_120 Hb_000096_120 Hb_000879_180--Hb_000096_120 Hb_000567_190 Hb_000567_190 Hb_000879_180--Hb_000567_190 Hb_010407_050 Hb_010407_050 Hb_000879_180--Hb_010407_050 Hb_001377_310 Hb_001377_310 Hb_000879_180--Hb_001377_310 Hb_012506_030 Hb_012506_030 Hb_000879_180--Hb_012506_030 Hb_004096_180 Hb_004096_180 Hb_000879_180--Hb_004096_180 Hb_000096_120--Hb_004096_180 Hb_006588_070 Hb_006588_070 Hb_000096_120--Hb_006588_070 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000046_570 Hb_000046_570 Hb_000096_120--Hb_000046_570 Hb_001635_040 Hb_001635_040 Hb_000567_190--Hb_001635_040 Hb_000635_040 Hb_000635_040 Hb_000567_190--Hb_000635_040 Hb_010362_030 Hb_010362_030 Hb_000567_190--Hb_010362_030 Hb_000130_420 Hb_000130_420 Hb_000567_190--Hb_000130_420 Hb_001761_120 Hb_001761_120 Hb_000567_190--Hb_001761_120 Hb_006688_050 Hb_006688_050 Hb_010407_050--Hb_006688_050 Hb_004994_010 Hb_004994_010 Hb_010407_050--Hb_004994_010 Hb_001488_200 Hb_001488_200 Hb_010407_050--Hb_001488_200 Hb_003861_050 Hb_003861_050 Hb_010407_050--Hb_003861_050 Hb_001005_030 Hb_001005_030 Hb_010407_050--Hb_001005_030 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_002326_040 Hb_002326_040 Hb_012506_030--Hb_002326_040 Hb_000441_220 Hb_000441_220 Hb_012506_030--Hb_000441_220 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_002811_270 Hb_002811_270 Hb_012506_030--Hb_002811_270 Hb_002872_030 Hb_002872_030 Hb_004096_180--Hb_002872_030 Hb_000087_060 Hb_000087_060 Hb_004096_180--Hb_000087_060 Hb_002028_210 Hb_002028_210 Hb_004096_180--Hb_002028_210 Hb_000359_040 Hb_000359_040 Hb_004096_180--Hb_000359_040 Hb_027428_010 Hb_027428_010 Hb_004096_180--Hb_027428_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.68849 5.18232 8.23768 6.37359 5.37932 6.18994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.52609 3.9149 4.49113 4.19703 3.20505

CAGE analysis