Hb_000359_040

Information

Type -
Description -
Location Contig359: 73599-77011
Sequence    

Annotation

kegg
ID rcu:RCOM_0536570
description hypothetical protein
nr
ID XP_002521590.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SS37
description Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=2 SV=1
trembl
ID B9S6H1
description Reticulon-like protein OS=Ricinus communis GN=RCOM_0536570 PE=4 SV=1
Gene Ontology
ID GO:0005739
description reticulon-like protein b8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37019: 73637-77401 , PASA_asmbl_37020: 73662-76600 , PASA_asmbl_37021: 74142-74477 , PASA_asmbl_37022: 75263-76600 , PASA_asmbl_37023: 76671-76893 , PASA_asmbl_37024: 77152-77345
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000359_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004994_010 0.0543695791 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
3 Hb_001408_140 0.061746579 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
4 Hb_001789_060 0.0621280748 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
5 Hb_001456_060 0.0632583133 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
6 Hb_002272_050 0.0644614111 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
7 Hb_000339_040 0.0648793934 - - PREDICTED: SAP30-binding protein isoform X2 [Jatropha curcas]
8 Hb_004109_320 0.0649439481 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
9 Hb_003861_050 0.0658575844 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
10 Hb_164390_010 0.0661467364 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
11 Hb_001226_150 0.0672173912 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
12 Hb_171900_090 0.06774387 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000087_060 0.069678566 - - protein transporter, putative [Ricinus communis]
14 Hb_007894_150 0.0702376325 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
15 Hb_004096_180 0.071142789 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
16 Hb_105105_010 0.0716567847 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
17 Hb_021419_030 0.0729209823 - - hypothetical protein glysoja_023295 [Glycine soja]
18 Hb_001359_050 0.0730024421 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012506_030 0.0731087705 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_001720_040 0.0731380001 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000359_040 Hb_000359_040 Hb_004994_010 Hb_004994_010 Hb_000359_040--Hb_004994_010 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001789_060 Hb_001789_060 Hb_000359_040--Hb_001789_060 Hb_001456_060 Hb_001456_060 Hb_000359_040--Hb_001456_060 Hb_002272_050 Hb_002272_050 Hb_000359_040--Hb_002272_050 Hb_000339_040 Hb_000339_040 Hb_000359_040--Hb_000339_040 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_004994_010--Hb_001456_060 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_004994_010--Hb_000339_040 Hb_105105_010 Hb_105105_010 Hb_001408_140--Hb_105105_010 Hb_001195_530 Hb_001195_530 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_001722_120 Hb_001722_120 Hb_001789_060--Hb_001722_120 Hb_001279_170 Hb_001279_170 Hb_001789_060--Hb_001279_170 Hb_001789_060--Hb_004994_010 Hb_000617_230 Hb_000617_230 Hb_001789_060--Hb_000617_230 Hb_002445_100 Hb_002445_100 Hb_001789_060--Hb_002445_100 Hb_009911_030 Hb_009911_030 Hb_001456_060--Hb_009911_030 Hb_001456_060--Hb_000339_040 Hb_004052_080 Hb_004052_080 Hb_001456_060--Hb_004052_080 Hb_002876_230 Hb_002876_230 Hb_001456_060--Hb_002876_230 Hb_005867_070 Hb_005867_070 Hb_001456_060--Hb_005867_070 Hb_000875_080 Hb_000875_080 Hb_002272_050--Hb_000875_080 Hb_171900_090 Hb_171900_090 Hb_002272_050--Hb_171900_090 Hb_000336_210 Hb_000336_210 Hb_002272_050--Hb_000336_210 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_000297_160 Hb_000297_160 Hb_002272_050--Hb_000297_160 Hb_000339_040--Hb_004052_080 Hb_000339_040--Hb_002876_230 Hb_000339_040--Hb_009911_030 Hb_004837_180 Hb_004837_180 Hb_000339_040--Hb_004837_180 Hb_000339_040--Hb_005867_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3756 30.3255 39.6041 26.1777 26.1529 21.2314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.291 25.264 22.9862 26.1639 18.7232

CAGE analysis