Hb_001722_120

Information

Type transcription factor
Description TF Family: Tify
Location Contig1722: 144557-148536
Sequence    

Annotation

kegg
ID rcu:RCOM_1143570
description hypothetical protein
nr
ID AIY25010.1
description JAZ9 [Hevea brasiliensis]
swissprot
ID Q9LVI4
description Protein TIFY 6B OS=Arabidopsis thaliana GN=TIFY6B PE=1 SV=1
trembl
ID A0A0B4RUT5
description JAZ9 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16236: 144557-148538 , PASA_asmbl_16237: 144583-148553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001722_120 0.0 transcription factor TF Family: Tify JAZ9 [Hevea brasiliensis]
2 Hb_001789_060 0.0628467507 - - calmodulin-binding heat-shock protein, putative [Ricinus communis]
3 Hb_000359_040 0.0849760032 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002445_100 0.0945088472 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
5 Hb_004994_010 0.0971009602 - - PREDICTED: COP9 signalosome complex subunit 1 [Jatropha curcas]
6 Hb_002272_050 0.0984268754 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
7 Hb_000077_320 0.0994238689 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
8 Hb_000163_220 0.0994839019 - - hypothetical protein CISIN_1g022301mg [Citrus sinensis]
9 Hb_005779_010 0.104753976 - - catalytic, putative [Ricinus communis]
10 Hb_002889_010 0.1061280882 - - ubx domain-containing, putative [Ricinus communis]
11 Hb_002320_040 0.106636956 - - PREDICTED: oligosaccharyltransferase complex subunit ostc [Jatropha curcas]
12 Hb_001981_030 0.106794484 - - nuclear acid binding protein, putative [Ricinus communis]
13 Hb_007632_190 0.1073482253 - - PREDICTED: inactive beta-amylase 4, chloroplastic isoform X5 [Camelina sativa]
14 Hb_028872_090 0.1076589756 - - PREDICTED: urease [Jatropha curcas]
15 Hb_001359_050 0.1077332166 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003861_050 0.1080870654 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
17 Hb_006570_080 0.1085148441 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
18 Hb_002686_170 0.1093231121 - - PREDICTED: uncharacterized protein LOC105632645 isoform X1 [Jatropha curcas]
19 Hb_000416_110 0.1096355261 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
20 Hb_000221_250 0.1101395042 - - hypothetical protein JCGZ_15814 [Jatropha curcas]

Gene co-expression network

sample Hb_001722_120 Hb_001722_120 Hb_001789_060 Hb_001789_060 Hb_001722_120--Hb_001789_060 Hb_000359_040 Hb_000359_040 Hb_001722_120--Hb_000359_040 Hb_002445_100 Hb_002445_100 Hb_001722_120--Hb_002445_100 Hb_004994_010 Hb_004994_010 Hb_001722_120--Hb_004994_010 Hb_002272_050 Hb_002272_050 Hb_001722_120--Hb_002272_050 Hb_000077_320 Hb_000077_320 Hb_001722_120--Hb_000077_320 Hb_001789_060--Hb_000359_040 Hb_001279_170 Hb_001279_170 Hb_001789_060--Hb_001279_170 Hb_001789_060--Hb_004994_010 Hb_000617_230 Hb_000617_230 Hb_001789_060--Hb_000617_230 Hb_001789_060--Hb_002445_100 Hb_000359_040--Hb_004994_010 Hb_001408_140 Hb_001408_140 Hb_000359_040--Hb_001408_140 Hb_001456_060 Hb_001456_060 Hb_000359_040--Hb_001456_060 Hb_000359_040--Hb_002272_050 Hb_000339_040 Hb_000339_040 Hb_000359_040--Hb_000339_040 Hb_000416_110 Hb_000416_110 Hb_002445_100--Hb_000416_110 Hb_005779_010 Hb_005779_010 Hb_002445_100--Hb_005779_010 Hb_000005_220 Hb_000005_220 Hb_002445_100--Hb_000005_220 Hb_002445_100--Hb_000339_040 Hb_106552_020 Hb_106552_020 Hb_002445_100--Hb_106552_020 Hb_002889_010 Hb_002889_010 Hb_002445_100--Hb_002889_010 Hb_003861_050 Hb_003861_050 Hb_004994_010--Hb_003861_050 Hb_000390_230 Hb_000390_230 Hb_004994_010--Hb_000390_230 Hb_004994_010--Hb_001456_060 Hb_010407_050 Hb_010407_050 Hb_004994_010--Hb_010407_050 Hb_004994_010--Hb_000339_040 Hb_000875_080 Hb_000875_080 Hb_002272_050--Hb_000875_080 Hb_171900_090 Hb_171900_090 Hb_002272_050--Hb_171900_090 Hb_000336_210 Hb_000336_210 Hb_002272_050--Hb_000336_210 Hb_005271_040 Hb_005271_040 Hb_002272_050--Hb_005271_040 Hb_000297_160 Hb_000297_160 Hb_002272_050--Hb_000297_160 Hb_002374_010 Hb_002374_010 Hb_000077_320--Hb_002374_010 Hb_002784_020 Hb_002784_020 Hb_000077_320--Hb_002784_020 Hb_000077_320--Hb_004994_010 Hb_000077_320--Hb_002445_100 Hb_000077_320--Hb_000617_230 Hb_000077_320--Hb_005779_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
29.4258 46.3296 65.4217 31.2673 43.628 30.7872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.179 35.7081 27.2887 52.9142 22.0561

CAGE analysis