Hb_002374_010

Information

Type -
Description -
Location Contig2374: 5031-13160
Sequence    

Annotation

kegg
ID vvi:100248990
description protein translocase subunit SECA2, chloroplastic
nr
ID XP_012078311.1
description PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
swissprot
ID D8WUA4
description Protein translocase subunit SECA2, chloroplastic OS=Arabidopsis thaliana GN=SECA2 PE=2 SV=1
trembl
ID A0A067K9R4
description Protein translocase subunit SecA OS=Jatropha curcas GN=JCGZ_12144 PE=3 SV=1
Gene Ontology
ID GO:0000166
description preprotein translocase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24827: 5021-6395 , PASA_asmbl_24830: 10446-10862 , PASA_asmbl_24831: 12333-13363 , PASA_asmbl_24832: 12549-13360
cDNA
(Sanger)
(ID:Location)		 005_M13.ab1: 12549-13360 , 021_M20.ab1: 12333-13363 , 048_H20.ab1: 12550-13360

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002374_010 0.0 - - PREDICTED: protein translocase subunit SECA2, chloroplastic [Jatropha curcas]
2 Hb_000077_320 0.0677453366 - - PREDICTED: lanC-like protein GCL2 [Jatropha curcas]
3 Hb_002641_030 0.0716061894 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
4 Hb_000126_010 0.0747459037 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X1 [Jatropha curcas]
5 Hb_002784_020 0.0758683161 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
6 Hb_011537_050 0.077134949 - - PREDICTED: protein EMSY-LIKE 3 isoform X1 [Jatropha curcas]
7 Hb_106552_020 0.0781185193 - - PREDICTED: serine/arginine-rich splicing factor RS2Z33 isoform X1 [Jatropha curcas]
8 Hb_001089_110 0.0792302766 - - conserved hypothetical protein [Ricinus communis]
9 Hb_183612_040 0.0796260035 - - PREDICTED: uncharacterized protein LOC105632370 [Jatropha curcas]
10 Hb_164544_010 0.0815466599 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
11 Hb_000111_210 0.0818449349 - - PREDICTED: thioredoxin-like protein CITRX, chloroplastic [Jatropha curcas]
12 Hb_005779_010 0.0822834761 - - catalytic, putative [Ricinus communis]
13 Hb_002445_100 0.0824378421 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 5 isoform X2 [Jatropha curcas]
14 Hb_002007_020 0.0844437718 - - PREDICTED: ATP-dependent DNA helicase Q-like SIM [Jatropha curcas]
15 Hb_000005_220 0.0850368622 - - DNA ligase 1, partial [Glycine soja]
16 Hb_000025_410 0.0861878927 - - PREDICTED: pentatricopeptide repeat-containing protein At5g01110-like [Populus euphratica]
17 Hb_000416_110 0.0872058841 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RFK1 isoform X2 [Jatropha curcas]
18 Hb_008103_070 0.0887765996 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 4-like [Jatropha curcas]
19 Hb_005289_040 0.0890605266 - - poly(A) polymerase, putative [Ricinus communis]
20 Hb_001225_040 0.0893948325 - - PREDICTED: meiosis-specific nuclear structural protein 1 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_002374_010 Hb_002374_010 Hb_000077_320 Hb_000077_320 Hb_002374_010--Hb_000077_320 Hb_002641_030 Hb_002641_030 Hb_002374_010--Hb_002641_030 Hb_000126_010 Hb_000126_010 Hb_002374_010--Hb_000126_010 Hb_002784_020 Hb_002784_020 Hb_002374_010--Hb_002784_020 Hb_011537_050 Hb_011537_050 Hb_002374_010--Hb_011537_050 Hb_106552_020 Hb_106552_020 Hb_002374_010--Hb_106552_020 Hb_000077_320--Hb_002784_020 Hb_004994_010 Hb_004994_010 Hb_000077_320--Hb_004994_010 Hb_002445_100 Hb_002445_100 Hb_000077_320--Hb_002445_100 Hb_000617_230 Hb_000617_230 Hb_000077_320--Hb_000617_230 Hb_005779_010 Hb_005779_010 Hb_000077_320--Hb_005779_010 Hb_000920_300 Hb_000920_300 Hb_002641_030--Hb_000920_300 Hb_002641_030--Hb_011537_050 Hb_003529_170 Hb_003529_170 Hb_002641_030--Hb_003529_170 Hb_001723_020 Hb_001723_020 Hb_002641_030--Hb_001723_020 Hb_033642_090 Hb_033642_090 Hb_002641_030--Hb_033642_090 Hb_000005_220 Hb_000005_220 Hb_000126_010--Hb_000005_220 Hb_000126_010--Hb_002445_100 Hb_000163_220 Hb_000163_220 Hb_000126_010--Hb_000163_220 Hb_063716_100 Hb_063716_100 Hb_000126_010--Hb_063716_100 Hb_000302_310 Hb_000302_310 Hb_000126_010--Hb_000302_310 Hb_017862_020 Hb_017862_020 Hb_002784_020--Hb_017862_020 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_000329_370 Hb_000329_370 Hb_011537_050--Hb_000329_370 Hb_001225_040 Hb_001225_040 Hb_011537_050--Hb_001225_040 Hb_001080_230 Hb_001080_230 Hb_011537_050--Hb_001080_230 Hb_003030_060 Hb_003030_060 Hb_011537_050--Hb_003030_060 Hb_000025_410 Hb_000025_410 Hb_011537_050--Hb_000025_410 Hb_000003_190 Hb_000003_190 Hb_011537_050--Hb_000003_190 Hb_007441_020 Hb_007441_020 Hb_106552_020--Hb_007441_020 Hb_106552_020--Hb_000163_220 Hb_106552_020--Hb_000005_220 Hb_106552_020--Hb_005779_010 Hb_154580_010 Hb_154580_010 Hb_106552_020--Hb_154580_010 Hb_000731_220 Hb_000731_220 Hb_106552_020--Hb_000731_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.73526 7.03541 6.54145 3.45102 5.09293 7.13633
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.13529 6.60886 2.63216 7.99441 4.16509

CAGE analysis