Hb_001723_020

Information

Type -
Description -
Location Contig1723: 26372-34231
Sequence    

Annotation

kegg
ID pop:POPTR_0008s10060g
description POPTRDRAFT_765880; hypothetical protein
nr
ID XP_012084140.1
description PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
swissprot
ID Q8CCP0
description Nuclear export mediator factor Nemf OS=Mus musculus GN=Nemf PE=1 SV=2
trembl
ID A0A067JVQ7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19052 PE=4 SV=1
Gene Ontology
ID GO:0046872
description nuclear export mediator factor nemf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16256: 26959-27116 , PASA_asmbl_16257: 29223-29463 , PASA_asmbl_16260: 33554-34130
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_020 0.0 - - PREDICTED: nuclear export mediator factor Nemf [Jatropha curcas]
2 Hb_007765_110 0.0737368236 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
3 Hb_000340_400 0.0760940294 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_001862_210 0.0776530477 - - PREDICTED: LOW QUALITY PROTEIN: salutaridine reductase-like [Citrus sinensis]
5 Hb_007035_050 0.078809158 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
6 Hb_003464_090 0.0793080014 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
7 Hb_002890_290 0.0802100878 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
8 Hb_002641_030 0.0805667454 - - PREDICTED: flowering time control protein FCA isoform X1 [Jatropha curcas]
9 Hb_000010_190 0.0819782583 - - PREDICTED: protein-L-isoaspartate O-methyltransferase 1 isoform X2 [Jatropha curcas]
10 Hb_001359_050 0.0820708079 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000868_090 0.0849429467 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
12 Hb_001235_150 0.0853875148 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
13 Hb_001396_200 0.0861750546 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 4 isoform X1 [Jatropha curcas]
14 Hb_000922_360 0.0862292459 - - -
15 Hb_000565_040 0.0920556751 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
16 Hb_006478_040 0.0924209172 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
17 Hb_003030_060 0.0927896717 - - PREDICTED: regulation of nuclear pre-mRNA domain-containing protein 2-like [Jatropha curcas]
18 Hb_002007_150 0.0930000329 - - -
19 Hb_002456_010 0.0942495749 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
20 Hb_001114_140 0.0949979946 - - PREDICTED: uncharacterized protein LOC105631631 [Jatropha curcas]

Gene co-expression network

sample Hb_001723_020 Hb_001723_020 Hb_007765_110 Hb_007765_110 Hb_001723_020--Hb_007765_110 Hb_000340_400 Hb_000340_400 Hb_001723_020--Hb_000340_400 Hb_001862_210 Hb_001862_210 Hb_001723_020--Hb_001862_210 Hb_007035_050 Hb_007035_050 Hb_001723_020--Hb_007035_050 Hb_003464_090 Hb_003464_090 Hb_001723_020--Hb_003464_090 Hb_002890_290 Hb_002890_290 Hb_001723_020--Hb_002890_290 Hb_007765_110--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_007765_110--Hb_007163_120 Hb_000868_090 Hb_000868_090 Hb_007765_110--Hb_000868_090 Hb_033772_030 Hb_033772_030 Hb_007765_110--Hb_033772_030 Hb_003370_030 Hb_003370_030 Hb_007765_110--Hb_003370_030 Hb_011491_010 Hb_011491_010 Hb_007765_110--Hb_011491_010 Hb_004837_180 Hb_004837_180 Hb_000340_400--Hb_004837_180 Hb_005116_060 Hb_005116_060 Hb_000340_400--Hb_005116_060 Hb_003001_080 Hb_003001_080 Hb_000340_400--Hb_003001_080 Hb_006478_040 Hb_006478_040 Hb_000340_400--Hb_006478_040 Hb_000340_400--Hb_007035_050 Hb_001359_050 Hb_001359_050 Hb_000340_400--Hb_001359_050 Hb_001862_210--Hb_002890_290 Hb_001862_210--Hb_000340_400 Hb_142368_010 Hb_142368_010 Hb_001862_210--Hb_142368_010 Hb_001862_210--Hb_004837_180 Hb_000069_380 Hb_000069_380 Hb_001862_210--Hb_000069_380 Hb_007035_050--Hb_005116_060 Hb_001396_200 Hb_001396_200 Hb_007035_050--Hb_001396_200 Hb_000318_250 Hb_000318_250 Hb_007035_050--Hb_000318_250 Hb_000886_050 Hb_000886_050 Hb_007035_050--Hb_000886_050 Hb_007035_050--Hb_007765_110 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_001227_030 Hb_001227_030 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_152175_010 Hb_152175_010 Hb_002890_290--Hb_152175_010 Hb_002890_290--Hb_003464_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.20908 2.11017 1.3011 1.01979 1.46046 0.860001
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.73418 1.66238 1.13755 1.8953 1.13647

CAGE analysis