Hb_000886_050

Information

Type -
Description -
Location Contig886: 64372-69535
Sequence    

Annotation

kegg
ID pop:POPTR_0003s01110g
description hypothetical protein
nr
ID XP_002303162.2
description hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
swissprot
ID Q7XQP4
description Serine/threonine-protein kinase SAPK7 OS=Oryza sativa subsp. japonica GN=SAPK7 PE=2 SV=2
trembl
ID B9GZG8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s01110g PE=4 SV=2
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase srk2a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61488: 64363-69526 , PASA_asmbl_61490: 66109-66584 , PASA_asmbl_61491: 68505-68796
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000886_050 0.0 - - hypothetical protein POPTR_0003s01110g [Populus trichocarpa]
2 Hb_002078_220 0.0596304618 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
3 Hb_000861_080 0.0697910369 - - PREDICTED: protein ELC-like [Jatropha curcas]
4 Hb_002890_290 0.0704066928 - - PREDICTED: outer envelope protein 64, mitochondrial [Jatropha curcas]
5 Hb_003464_090 0.0706141063 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
6 Hb_000076_160 0.0715533946 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
7 Hb_005653_090 0.07160514 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
8 Hb_000331_680 0.0719970735 - - Protein bem46, putative [Ricinus communis]
9 Hb_000803_070 0.0721369331 - - PREDICTED: protein TRAUCO [Jatropha curcas]
10 Hb_028962_020 0.0729566442 - - hypothetical protein POPTR_0016s00660g [Populus trichocarpa]
11 Hb_003175_030 0.0738396368 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
12 Hb_007765_110 0.0746671648 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
13 Hb_007035_050 0.0772293306 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
14 Hb_152175_010 0.0779500278 - - Protein grpE, putative [Ricinus communis]
15 Hb_006588_210 0.0780531827 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
16 Hb_000087_060 0.0781105996 - - protein transporter, putative [Ricinus communis]
17 Hb_000340_400 0.0782486953 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
18 Hb_008511_090 0.0785324551 - - PREDICTED: BTB/POZ domain-containing protein At3g05675-like [Jatropha curcas]
19 Hb_000679_310 0.0789686482 - - PREDICTED: putative UDP-sugar transporter DDB_G0278631 isoform X1 [Jatropha curcas]
20 Hb_000649_110 0.0797534149 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000886_050 Hb_000886_050 Hb_002078_220 Hb_002078_220 Hb_000886_050--Hb_002078_220 Hb_000861_080 Hb_000861_080 Hb_000886_050--Hb_000861_080 Hb_002890_290 Hb_002890_290 Hb_000886_050--Hb_002890_290 Hb_003464_090 Hb_003464_090 Hb_000886_050--Hb_003464_090 Hb_000076_160 Hb_000076_160 Hb_000886_050--Hb_000076_160 Hb_005653_090 Hb_005653_090 Hb_000886_050--Hb_005653_090 Hb_000070_080 Hb_000070_080 Hb_002078_220--Hb_000070_080 Hb_002078_220--Hb_000076_160 Hb_008511_090 Hb_008511_090 Hb_002078_220--Hb_008511_090 Hb_008103_060 Hb_008103_060 Hb_002078_220--Hb_008103_060 Hb_002876_130 Hb_002876_130 Hb_002078_220--Hb_002876_130 Hb_001089_050 Hb_001089_050 Hb_000861_080--Hb_001089_050 Hb_000803_070 Hb_000803_070 Hb_000861_080--Hb_000803_070 Hb_003398_080 Hb_003398_080 Hb_000861_080--Hb_003398_080 Hb_001195_530 Hb_001195_530 Hb_000861_080--Hb_001195_530 Hb_000866_460 Hb_000866_460 Hb_000861_080--Hb_000866_460 Hb_020831_030 Hb_020831_030 Hb_000861_080--Hb_020831_030 Hb_001227_030 Hb_001227_030 Hb_002890_290--Hb_001227_030 Hb_005489_020 Hb_005489_020 Hb_002890_290--Hb_005489_020 Hb_000331_680 Hb_000331_680 Hb_002890_290--Hb_000331_680 Hb_000025_410 Hb_000025_410 Hb_002890_290--Hb_000025_410 Hb_152175_010 Hb_152175_010 Hb_002890_290--Hb_152175_010 Hb_002890_290--Hb_003464_090 Hb_007163_120 Hb_007163_120 Hb_003464_090--Hb_007163_120 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_003464_090--Hb_005653_090 Hb_007765_110 Hb_007765_110 Hb_003464_090--Hb_007765_110 Hb_005306_160 Hb_005306_160 Hb_000076_160--Hb_005306_160 Hb_000928_220 Hb_000928_220 Hb_000076_160--Hb_000928_220 Hb_000679_310 Hb_000679_310 Hb_000076_160--Hb_000679_310 Hb_000358_230 Hb_000358_230 Hb_000076_160--Hb_000358_230 Hb_000087_060 Hb_000087_060 Hb_000076_160--Hb_000087_060 Hb_001751_140 Hb_001751_140 Hb_000076_160--Hb_001751_140 Hb_001225_040 Hb_001225_040 Hb_005653_090--Hb_001225_040 Hb_005653_090--Hb_000331_680 Hb_008406_200 Hb_008406_200 Hb_005653_090--Hb_008406_200 Hb_005653_090--Hb_003849_110 Hb_000603_280 Hb_000603_280 Hb_005653_090--Hb_000603_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.6227 62.1898 37.7937 34.4467 34.2267 33.4189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7432 38.8237 28.3772 31.3066 22.948

CAGE analysis