Hb_007163_120

Information

Type -
Description -
Location Contig7163: 199580-202047
Sequence    

Annotation

kegg
ID rcu:RCOM_0188680
description WD-repeat protein, putative (EC:2.7.11.7)
nr
ID XP_012079498.1
description PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
swissprot
ID Q9M2Z2
description COMPASS-like H3K4 histone methylase component WDR5A OS=Arabidopsis thaliana GN=WDR5A PE=1 SV=1
trembl
ID A0A067K7C9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12607 PE=4 SV=1
Gene Ontology
ID GO:0048188
description wd repeat-containing protein 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55477: 199843-202042
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007163_120 0.0 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
2 Hb_003464_090 0.0406423294 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
3 Hb_003370_030 0.0452096877 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
4 Hb_033772_030 0.0518615084 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
5 Hb_011491_010 0.0571690797 - - Protein YME1, putative [Ricinus communis]
6 Hb_007765_110 0.0573071408 - - PREDICTED: zinc finger CCCH domain-containing protein 40-like [Jatropha curcas]
7 Hb_024621_040 0.057673915 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
8 Hb_000603_280 0.0591869642 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
9 Hb_015934_040 0.060183983 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
10 Hb_001005_190 0.0602650268 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
11 Hb_000538_270 0.0621332779 - - PREDICTED: serine/threonine-protein kinase HT1-like [Citrus sinensis]
12 Hb_001838_060 0.0622800171 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1b(c38)-like isoform X3 [Jatropha curcas]
13 Hb_000331_670 0.0624568718 - - PREDICTED: protein tipD [Jatropha curcas]
14 Hb_002686_030 0.0639940622 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
15 Hb_167498_010 0.0641230155 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
16 Hb_005653_090 0.0658756163 - - PREDICTED: protein HIRA isoform X1 [Jatropha curcas]
17 Hb_000172_430 0.0664152179 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001409_020 0.0669050119 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
19 Hb_000395_130 0.0680539282 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
20 Hb_002043_140 0.0681711569 - - PREDICTED: uncharacterized protein At1g51745-like [Jatropha curcas]

Gene co-expression network

sample Hb_007163_120 Hb_007163_120 Hb_003464_090 Hb_003464_090 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_024621_040 Hb_024621_040 Hb_007163_120--Hb_024621_040 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_003464_090--Hb_007765_110 Hb_001114_140 Hb_001114_140 Hb_003370_030--Hb_001114_140 Hb_005000_260 Hb_005000_260 Hb_003370_030--Hb_005000_260 Hb_003370_030--Hb_033772_030 Hb_001266_100 Hb_001266_100 Hb_003370_030--Hb_001266_100 Hb_003370_030--Hb_003464_090 Hb_006922_010 Hb_006922_010 Hb_033772_030--Hb_006922_010 Hb_002900_090 Hb_002900_090 Hb_033772_030--Hb_002900_090 Hb_033772_030--Hb_007765_110 Hb_033772_030--Hb_003464_090 Hb_001005_190 Hb_001005_190 Hb_011491_010--Hb_001005_190 Hb_001828_130 Hb_001828_130 Hb_011491_010--Hb_001828_130 Hb_000243_250 Hb_000243_250 Hb_011491_010--Hb_000243_250 Hb_000092_020 Hb_000092_020 Hb_011491_010--Hb_000092_020 Hb_001818_070 Hb_001818_070 Hb_011491_010--Hb_001818_070 Hb_000868_090 Hb_000868_090 Hb_007765_110--Hb_000868_090 Hb_007765_110--Hb_003370_030 Hb_007765_110--Hb_011491_010 Hb_024621_040--Hb_003464_090 Hb_002028_210 Hb_002028_210 Hb_024621_040--Hb_002028_210 Hb_007894_110 Hb_007894_110 Hb_024621_040--Hb_007894_110 Hb_000025_730 Hb_000025_730 Hb_024621_040--Hb_000025_730 Hb_001195_530 Hb_001195_530 Hb_024621_040--Hb_001195_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3947 42.6286 23.352 25.0456 28.0262 29.2721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.5006 30.8555 34.7564 31.1151 21.9521

CAGE analysis