Hb_024621_040

Information

Type transcription factor
Description TF Family: ERF
Location Contig24621: 44023-46485
Sequence    

Annotation

kegg
ID gmx:102660769
description uncharacterized LOC102660769
nr
ID XP_010103776.1
description hypothetical protein L484_014666 [Morus notabilis]
swissprot
ID -
description -
trembl
ID W9RM35
description Uncharacterized protein OS=Morus notabilis GN=L484_014666 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25604: 44079-46093 , PASA_asmbl_25605: 44094-46075
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024621_040 0.0 transcription factor TF Family: ERF hypothetical protein L484_014666 [Morus notabilis]
2 Hb_007163_120 0.057673915 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
3 Hb_003464_090 0.0577318098 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
4 Hb_002028_210 0.0577420585 - - PREDICTED: uncharacterized protein LOC105638038 [Jatropha curcas]
5 Hb_007894_110 0.0618454979 - - Heat-shock protein 105 kDa, putative [Ricinus communis]
6 Hb_000025_730 0.0641402417 - - PREDICTED: 60S ribosomal protein L2, mitochondrial [Jatropha curcas]
7 Hb_001195_530 0.0656633386 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001408_140 0.0678227397 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
9 Hb_003849_110 0.07068248 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
10 Hb_000317_370 0.0728724076 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420-like [Jatropha curcas]
11 Hb_000258_160 0.0732932619 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000603_280 0.0740561319 - - PREDICTED: uncharacterized protein LOC105638082 [Jatropha curcas]
13 Hb_001473_160 0.0749875643 - - Vesicle-associated membrane protein, putative [Ricinus communis]
14 Hb_000069_310 0.0751241968 - - ubiquitin ligase [Cucumis melo subsp. melo]
15 Hb_003370_030 0.0751973885 - - PREDICTED: uncharacterized protein LOC105635547 isoform X2 [Jatropha curcas]
16 Hb_002217_170 0.0752306185 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
17 Hb_003494_020 0.0752723048 - - ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
18 Hb_015934_040 0.0758901685 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
19 Hb_033772_030 0.0771907167 - - PREDICTED: CST complex subunit CTC1 [Jatropha curcas]
20 Hb_002818_030 0.0772493453 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]

Gene co-expression network

sample Hb_024621_040 Hb_024621_040 Hb_007163_120 Hb_007163_120 Hb_024621_040--Hb_007163_120 Hb_003464_090 Hb_003464_090 Hb_024621_040--Hb_003464_090 Hb_002028_210 Hb_002028_210 Hb_024621_040--Hb_002028_210 Hb_007894_110 Hb_007894_110 Hb_024621_040--Hb_007894_110 Hb_000025_730 Hb_000025_730 Hb_024621_040--Hb_000025_730 Hb_001195_530 Hb_001195_530 Hb_024621_040--Hb_001195_530 Hb_007163_120--Hb_003464_090 Hb_003370_030 Hb_003370_030 Hb_007163_120--Hb_003370_030 Hb_033772_030 Hb_033772_030 Hb_007163_120--Hb_033772_030 Hb_011491_010 Hb_011491_010 Hb_007163_120--Hb_011491_010 Hb_007765_110 Hb_007765_110 Hb_007163_120--Hb_007765_110 Hb_003849_110 Hb_003849_110 Hb_003464_090--Hb_003849_110 Hb_001359_050 Hb_001359_050 Hb_003464_090--Hb_001359_050 Hb_001408_140 Hb_001408_140 Hb_003464_090--Hb_001408_140 Hb_005653_090 Hb_005653_090 Hb_003464_090--Hb_005653_090 Hb_003464_090--Hb_007765_110 Hb_001473_160 Hb_001473_160 Hb_002028_210--Hb_001473_160 Hb_093458_040 Hb_093458_040 Hb_002028_210--Hb_093458_040 Hb_001408_040 Hb_001408_040 Hb_002028_210--Hb_001408_040 Hb_002028_210--Hb_005653_090 Hb_002492_010 Hb_002492_010 Hb_002028_210--Hb_002492_010 Hb_007416_330 Hb_007416_330 Hb_007894_110--Hb_007416_330 Hb_007894_110--Hb_001408_140 Hb_007894_110--Hb_000025_730 Hb_003428_010 Hb_003428_010 Hb_007894_110--Hb_003428_010 Hb_003058_260 Hb_003058_260 Hb_007894_110--Hb_003058_260 Hb_002073_200 Hb_002073_200 Hb_000025_730--Hb_002073_200 Hb_000025_730--Hb_003849_110 Hb_000172_430 Hb_000172_430 Hb_000025_730--Hb_000172_430 Hb_000069_310 Hb_000069_310 Hb_000025_730--Hb_000069_310 Hb_162275_050 Hb_162275_050 Hb_000025_730--Hb_162275_050 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_001195_530--Hb_001408_140 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.7014 13.9159 9.16396 11.5754 9.57883 8.45852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82266 11.0875 12.346 10.3915 7.78838

CAGE analysis