Hb_105105_010

Information

Type -
Description -
Location Contig105105: 1605-25206
Sequence    

Annotation

kegg
ID rcu:RCOM_0476140
description hypothetical protein
nr
ID XP_012064662.1
description PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
swissprot
ID Q5ZKV9
description Coiled-coil domain-containing protein 132 OS=Gallus gallus GN=CCDC132 PE=2 SV=1
trembl
ID A0A067LI81
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05406 PE=4 SV=1
Gene Ontology
ID GO:0006486
description coiled-coil domain-containing protein 132 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01743: 1692-27733 , PASA_asmbl_01744: 22124-22356 , PASA_asmbl_01746: 2148-2357 , PASA_asmbl_01747: 2096-2301
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_105105_010 0.0 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
2 Hb_002205_250 0.0404822665 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
3 Hb_001408_140 0.0462292205 - - hypothetical protein JCGZ_00234 [Jatropha curcas]
4 Hb_001195_530 0.0487631476 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001716_020 0.0492518249 - - hydrolase, putative [Ricinus communis]
6 Hb_003835_070 0.0533957149 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
7 Hb_002492_010 0.0575960974 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
8 Hb_000614_210 0.059151558 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
9 Hb_005137_040 0.060437439 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
10 Hb_001481_060 0.0641750797 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
11 Hb_001226_150 0.0645204186 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
12 Hb_012506_030 0.0647293972 - - AP-2 complex subunit alpha, putative [Ricinus communis]
13 Hb_000856_040 0.0649727169 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
14 Hb_020831_030 0.0649944031 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005918_010 0.0652803021 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
16 Hb_009911_030 0.0663068638 transcription factor TF Family: FAR1 far-red impaired response 1 -like protein [Gossypium arboreum]
17 Hb_002217_170 0.0672264824 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
18 Hb_005867_070 0.0682703693 - - DNA binding protein, putative [Ricinus communis]
19 Hb_000340_530 0.0684028221 - - hypothetical protein VITISV_016664 [Vitis vinifera]
20 Hb_001814_030 0.0684162894 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]

Gene co-expression network

sample Hb_105105_010 Hb_105105_010 Hb_002205_250 Hb_002205_250 Hb_105105_010--Hb_002205_250 Hb_001408_140 Hb_001408_140 Hb_105105_010--Hb_001408_140 Hb_001195_530 Hb_001195_530 Hb_105105_010--Hb_001195_530 Hb_001716_020 Hb_001716_020 Hb_105105_010--Hb_001716_020 Hb_003835_070 Hb_003835_070 Hb_105105_010--Hb_003835_070 Hb_002492_010 Hb_002492_010 Hb_105105_010--Hb_002492_010 Hb_002205_250--Hb_003835_070 Hb_000614_210 Hb_000614_210 Hb_002205_250--Hb_000614_210 Hb_001814_030 Hb_001814_030 Hb_002205_250--Hb_001814_030 Hb_002205_250--Hb_001716_020 Hb_000243_210 Hb_000243_210 Hb_002205_250--Hb_000243_210 Hb_001408_140--Hb_001195_530 Hb_003464_090 Hb_003464_090 Hb_001408_140--Hb_003464_090 Hb_021419_030 Hb_021419_030 Hb_001408_140--Hb_021419_030 Hb_093458_040 Hb_093458_040 Hb_001408_140--Hb_093458_040 Hb_000340_530 Hb_000340_530 Hb_001408_140--Hb_000340_530 Hb_020831_030 Hb_020831_030 Hb_001195_530--Hb_020831_030 Hb_003640_040 Hb_003640_040 Hb_001195_530--Hb_003640_040 Hb_002056_090 Hb_002056_090 Hb_001195_530--Hb_002056_090 Hb_001195_530--Hb_002205_250 Hb_001716_020--Hb_002492_010 Hb_001481_060 Hb_001481_060 Hb_001716_020--Hb_001481_060 Hb_000028_130 Hb_000028_130 Hb_001716_020--Hb_000028_130 Hb_000029_060 Hb_000029_060 Hb_001716_020--Hb_000029_060 Hb_002217_170 Hb_002217_170 Hb_003835_070--Hb_002217_170 Hb_003835_070--Hb_000614_210 Hb_012194_030 Hb_012194_030 Hb_003835_070--Hb_012194_030 Hb_011618_090 Hb_011618_090 Hb_003835_070--Hb_011618_090 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_004143_100 Hb_004143_100 Hb_002492_010--Hb_004143_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.77493 15.3163 13.9454 12.2695 11.1014 12.4266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.24607 9.85924 12.3064 13.1278 10.9245

CAGE analysis