Hb_006588_070

Information

Type -
Description -
Location Contig6588: 51725-54935
Sequence    

Annotation

kegg
ID rcu:RCOM_1172990
description 20 kD nuclear cap binding protein, putative
nr
ID XP_002517864.1
description 20 kD nuclear cap binding protein, putative [Ricinus communis]
swissprot
ID Q9XFD1
description Nuclear cap-binding protein subunit 2 OS=Arabidopsis thaliana GN=CBP20 PE=1 SV=1
trembl
ID B9RVU5
description 20 kD nuclear cap binding protein, putative OS=Ricinus communis GN=RCOM_1172990 PE=4 SV=1
Gene Ontology
ID GO:0005846
description nuclear cap-binding protein subunit 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52874: 53588-54145 , PASA_asmbl_52875: 51573-54859
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006588_070 0.0 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
2 Hb_002872_030 0.0606870185 - - PREDICTED: OTU domain-containing protein DDB_G0284757 [Jatropha curcas]
3 Hb_000776_100 0.0620534661 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
4 Hb_027428_010 0.0631632618 - - alpha-1,3-mannosyltransferase, putative [Ricinus communis]
5 Hb_022132_050 0.0702329434 - - GTP binding protein, putative [Ricinus communis]
6 Hb_001051_080 0.0728799508 - - hypothetical protein EUGRSUZ_B02508 [Eucalyptus grandis]
7 Hb_000096_120 0.0740412039 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
8 Hb_000239_060 0.0750923215 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003038_120 0.0767710192 - - rer1 protein, putative [Ricinus communis]
10 Hb_000879_180 0.0777232904 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_007441_020 0.0779692942 - - Rab6 [Hevea brasiliensis]
12 Hb_005460_050 0.078830166 - - COR413-PM2, putative [Ricinus communis]
13 Hb_004096_180 0.0788538787 - - PREDICTED: 14-3-3-like protein A [Jatropha curcas]
14 Hb_003096_060 0.0801185824 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
15 Hb_073973_130 0.0811037363 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
16 Hb_000076_160 0.0815060084 - - PREDICTED: AP-5 complex subunit zeta-1 [Jatropha curcas]
17 Hb_000035_110 0.0816555242 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
18 Hb_001751_140 0.081773981 - - PREDICTED: uncharacterized protein LOC105648510 isoform X1 [Jatropha curcas]
19 Hb_002235_210 0.0820814344 - - PREDICTED: vesicle transport v-SNARE 13-like [Populus euphratica]
20 Hb_010381_090 0.0833304733 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]

Gene co-expression network

sample Hb_006588_070 Hb_006588_070 Hb_002872_030 Hb_002872_030 Hb_006588_070--Hb_002872_030 Hb_000776_100 Hb_000776_100 Hb_006588_070--Hb_000776_100 Hb_027428_010 Hb_027428_010 Hb_006588_070--Hb_027428_010 Hb_022132_050 Hb_022132_050 Hb_006588_070--Hb_022132_050 Hb_001051_080 Hb_001051_080 Hb_006588_070--Hb_001051_080 Hb_000096_120 Hb_000096_120 Hb_006588_070--Hb_000096_120 Hb_002872_030--Hb_027428_010 Hb_010381_090 Hb_010381_090 Hb_002872_030--Hb_010381_090 Hb_008453_140 Hb_008453_140 Hb_002872_030--Hb_008453_140 Hb_007416_300 Hb_007416_300 Hb_002872_030--Hb_007416_300 Hb_073973_130 Hb_073973_130 Hb_002872_030--Hb_073973_130 Hb_000414_050 Hb_000414_050 Hb_000776_100--Hb_000414_050 Hb_003038_120 Hb_003038_120 Hb_000776_100--Hb_003038_120 Hb_000138_130 Hb_000138_130 Hb_000776_100--Hb_000138_130 Hb_000101_380 Hb_000101_380 Hb_000776_100--Hb_000101_380 Hb_002783_170 Hb_002783_170 Hb_000776_100--Hb_002783_170 Hb_027428_010--Hb_073973_130 Hb_005337_090 Hb_005337_090 Hb_027428_010--Hb_005337_090 Hb_000185_070 Hb_000185_070 Hb_027428_010--Hb_000185_070 Hb_027428_010--Hb_010381_090 Hb_022132_050--Hb_073973_130 Hb_022132_050--Hb_002872_030 Hb_000392_230 Hb_000392_230 Hb_022132_050--Hb_000392_230 Hb_000649_230 Hb_000649_230 Hb_022132_050--Hb_000649_230 Hb_022132_050--Hb_027428_010 Hb_004631_180 Hb_004631_180 Hb_001051_080--Hb_004631_180 Hb_001051_080--Hb_007416_300 Hb_000120_430 Hb_000120_430 Hb_001051_080--Hb_000120_430 Hb_033834_030 Hb_033834_030 Hb_001051_080--Hb_033834_030 Hb_000309_040 Hb_000309_040 Hb_001051_080--Hb_000309_040 Hb_003549_150 Hb_003549_150 Hb_001051_080--Hb_003549_150 Hb_000879_180 Hb_000879_180 Hb_000096_120--Hb_000879_180 Hb_004096_180 Hb_004096_180 Hb_000096_120--Hb_004096_180 Hb_000331_090 Hb_000331_090 Hb_000096_120--Hb_000331_090 Hb_000207_150 Hb_000207_150 Hb_000096_120--Hb_000207_150 Hb_000046_570 Hb_000046_570 Hb_000096_120--Hb_000046_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0939 19.5626 28.7163 24.58 18.4795 27.9968
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4081 19.5538 11.9994 13.5745 9.74459

CAGE analysis