Hb_000207_150

Information

Type -
Description -
Location Contig207: 183406-187120
Sequence    

Annotation

kegg
ID pop:POPTR_0013s11730g
description hypothetical protein
nr
ID XP_012065770.1
description PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
swissprot
ID Q8L586
description Uncharacterized membrane protein At4g09580 OS=Arabidopsis thaliana GN=At4g09580 PE=1 SV=1
trembl
ID A0A067L7Z4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25458 PE=4 SV=1
Gene Ontology
ID GO:0003676
description uncharacterized membrane protein at4g09580-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21313: 185805-186360 , PASA_asmbl_21314: 183201-187031 , PASA_asmbl_21315: 185614-185744
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000207_150 0.0 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
2 Hb_000107_230 0.0596260391 - - unknown [Medicago truncatula]
3 Hb_000058_130 0.0619130721 - - PREDICTED: uncharacterized protein LOC105640884 [Jatropha curcas]
4 Hb_000331_090 0.0623332733 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
5 Hb_007831_010 0.0676022125 - - PREDICTED: oligoribonuclease [Vitis vinifera]
6 Hb_003929_170 0.0696532228 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
7 Hb_000579_120 0.0705014486 - - PREDICTED: uncharacterized protein LOC105633845 [Jatropha curcas]
8 Hb_001232_190 0.0735959914 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]
9 Hb_006588_170 0.0756404464 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
10 Hb_000720_040 0.075785281 - - PREDICTED: replication factor C subunit 2 [Jatropha curcas]
11 Hb_001959_110 0.0768021444 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
12 Hb_000086_170 0.0772910551 - - PREDICTED: serine/threonine-protein kinase 19 [Jatropha curcas]
13 Hb_000096_120 0.0806149582 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]
14 Hb_163175_010 0.0827639625 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
15 Hb_000130_270 0.0865640932 - - PREDICTED: malate dehydrogenase, mitochondrial [Jatropha curcas]
16 Hb_002641_060 0.088054505 - - prefoldin subunit, putative [Ricinus communis]
17 Hb_007878_010 0.0883666529 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
18 Hb_008616_050 0.0887300412 - - PREDICTED: putative deoxyribonuclease TATDN1 [Jatropha curcas]
19 Hb_161574_020 0.0888226834 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
20 Hb_000313_220 0.0897758196 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000207_150 Hb_000207_150 Hb_000107_230 Hb_000107_230 Hb_000207_150--Hb_000107_230 Hb_000058_130 Hb_000058_130 Hb_000207_150--Hb_000058_130 Hb_000331_090 Hb_000331_090 Hb_000207_150--Hb_000331_090 Hb_007831_010 Hb_007831_010 Hb_000207_150--Hb_007831_010 Hb_003929_170 Hb_003929_170 Hb_000207_150--Hb_003929_170 Hb_000579_120 Hb_000579_120 Hb_000207_150--Hb_000579_120 Hb_004157_100 Hb_004157_100 Hb_000107_230--Hb_004157_100 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_000107_230--Hb_003929_170 Hb_000058_130--Hb_000579_120 Hb_002157_120 Hb_002157_120 Hb_000058_130--Hb_002157_120 Hb_000028_520 Hb_000028_520 Hb_000058_130--Hb_000028_520 Hb_001232_190 Hb_001232_190 Hb_000058_130--Hb_001232_190 Hb_002874_180 Hb_002874_180 Hb_000058_130--Hb_002874_180 Hb_001959_110 Hb_001959_110 Hb_000331_090--Hb_001959_110 Hb_163175_010 Hb_163175_010 Hb_000331_090--Hb_163175_010 Hb_001405_210 Hb_001405_210 Hb_000331_090--Hb_001405_210 Hb_000720_040 Hb_000720_040 Hb_000331_090--Hb_000720_040 Hb_000331_090--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_007831_010--Hb_006153_070 Hb_003430_050 Hb_003430_050 Hb_007831_010--Hb_003430_050 Hb_015807_050 Hb_015807_050 Hb_007831_010--Hb_015807_050 Hb_007831_010--Hb_006588_170 Hb_001087_030 Hb_001087_030 Hb_003929_170--Hb_001087_030 Hb_000046_570 Hb_000046_570 Hb_003929_170--Hb_000046_570 Hb_000009_400 Hb_000009_400 Hb_003929_170--Hb_000009_400 Hb_000390_250 Hb_000390_250 Hb_003929_170--Hb_000390_250 Hb_000579_120--Hb_001232_190 Hb_000110_310 Hb_000110_310 Hb_000579_120--Hb_000110_310 Hb_009898_050 Hb_009898_050 Hb_000579_120--Hb_009898_050 Hb_000976_120 Hb_000976_120 Hb_000579_120--Hb_000976_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.16563 5.55743 11.5962 12.7985 6.39122 9.21512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.0732 8.71472 5.05637 6.17311 6.39767

CAGE analysis