Hb_004157_100

Information

Type -
Description -
Location Contig4157: 72420-77829
Sequence    

Annotation

kegg
ID tcc:TCM_041901
description RNA binding protein, putative isoform 1
nr
ID XP_012064978.1
description PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
swissprot
ID Q6AZB8
description Putative nuclease HARBI1 OS=Danio rerio GN=harbi1 PE=2 SV=1
trembl
ID A0A067LAF9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05660 PE=4 SV=1
Gene Ontology
ID GO:0097159
description nuclease harbi1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41118: 72338-77684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004157_100 0.0 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
2 Hb_000107_230 0.0682404816 - - unknown [Medicago truncatula]
3 Hb_054745_010 0.0736295225 - - conserved hypothetical protein [Ricinus communis]
4 Hb_169631_010 0.0780648943 - - MADS-box transcription factor, putative [Ricinus communis]
5 Hb_000676_080 0.0896291734 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
6 Hb_000004_020 0.0907757456 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000022_020 0.0914048129 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
8 Hb_086085_020 0.0916871016 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
9 Hb_005015_060 0.0921798515 - - PREDICTED: developmentally-regulated G-protein 3 [Jatropha curcas]
10 Hb_000107_080 0.0952532166 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
11 Hb_006153_070 0.0966093131 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
12 Hb_001014_110 0.0977665599 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
13 Hb_000787_160 0.0982268319 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
14 Hb_006588_170 0.0982995463 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
15 Hb_000207_150 0.0992633435 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
16 Hb_008970_030 0.1023286653 - - arf gtpase-activating protein, putative [Ricinus communis]
17 Hb_001191_110 0.1033730678 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
18 Hb_007831_010 0.1054879784 - - PREDICTED: oligoribonuclease [Vitis vinifera]
19 Hb_000256_150 0.1057692319 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
20 Hb_001232_190 0.1059652503 - - PREDICTED: uncharacterized protein LOC105639761 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004157_100 Hb_004157_100 Hb_000107_230 Hb_000107_230 Hb_004157_100--Hb_000107_230 Hb_054745_010 Hb_054745_010 Hb_004157_100--Hb_054745_010 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_000676_080 Hb_000676_080 Hb_004157_100--Hb_000676_080 Hb_000004_020 Hb_000004_020 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000594_050 Hb_000594_050 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170 Hb_054745_010--Hb_000676_080 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210 Hb_000249_070 Hb_000249_070 Hb_169631_010--Hb_000249_070 Hb_002660_150 Hb_002660_150 Hb_169631_010--Hb_002660_150 Hb_169631_010--Hb_000107_230 Hb_004052_040 Hb_004052_040 Hb_169631_010--Hb_004052_040 Hb_009049_020 Hb_009049_020 Hb_169631_010--Hb_009049_020 Hb_005527_020 Hb_005527_020 Hb_000676_080--Hb_005527_020 Hb_001250_060 Hb_001250_060 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_002414_050 Hb_002414_050 Hb_000022_020--Hb_002414_050 Hb_000830_030 Hb_000830_030 Hb_000022_020--Hb_000830_030 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000022_020--Hb_004452_110 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26353 0.722762 1.41694 2.73909 0.889164 2.26891
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.48988 1.24912 0.800123 1.34655 1.37783

CAGE analysis