Hb_004052_040

Information

Type -
Description -
Location Contig4052: 52153-59742
Sequence    

Annotation

kegg
ID rcu:RCOM_1469490
description RNA binding protein, putative
nr
ID XP_012080394.1
description PREDICTED: putative G3BP-like protein [Jatropha curcas]
swissprot
ID O94260
description Putative G3BP-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nxt3 PE=1 SV=1
trembl
ID A0A067KHN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11735 PE=4 SV=1
Gene Ontology
ID GO:0005622
description g3bp-like protein isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40180: 52257-59469 , PASA_asmbl_40182: 58628-58901
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004052_040 0.0 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
2 Hb_006478_020 0.0988455784 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_169631_010 0.102574 - - MADS-box transcription factor, putative [Ricinus communis]
4 Hb_000249_070 0.1063449652 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
5 Hb_059480_010 0.1077719884 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
6 Hb_004191_020 0.1097946749 - - PREDICTED: cysteine synthase [Jatropha curcas]
7 Hb_002685_110 0.1133737535 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
8 Hb_001252_130 0.1156176655 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
9 Hb_004531_140 0.1168194989 - - PREDICTED: uncharacterized protein LOC105635023 [Jatropha curcas]
10 Hb_000676_250 0.1173876847 - - PREDICTED: protein RTE1-HOMOLOG isoform X1 [Jatropha curcas]
11 Hb_028697_010 0.1191111282 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
12 Hb_005023_010 0.1219798422 - - PREDICTED: putative lipase ROG1 [Jatropha curcas]
13 Hb_000599_180 0.1230006141 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_000107_230 0.1232155882 - - unknown [Medicago truncatula]
15 Hb_001971_010 0.1241580488 - - F23N19.4 [Arabidopsis thaliana]
16 Hb_171376_010 0.1249082608 - - PREDICTED: uncharacterized protein LOC105630877 isoform X1 [Jatropha curcas]
17 Hb_022833_100 0.1250153423 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
18 Hb_000335_030 0.1250829617 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17033 [Jatropha curcas]
19 Hb_001711_020 0.1259975528 - - PREDICTED: AP-2 complex subunit mu [Jatropha curcas]
20 Hb_000207_330 0.126632688 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004052_040 Hb_004052_040 Hb_006478_020 Hb_006478_020 Hb_004052_040--Hb_006478_020 Hb_169631_010 Hb_169631_010 Hb_004052_040--Hb_169631_010 Hb_000249_070 Hb_000249_070 Hb_004052_040--Hb_000249_070 Hb_059480_010 Hb_059480_010 Hb_004052_040--Hb_059480_010 Hb_004191_020 Hb_004191_020 Hb_004052_040--Hb_004191_020 Hb_002685_110 Hb_002685_110 Hb_004052_040--Hb_002685_110 Hb_000116_270 Hb_000116_270 Hb_006478_020--Hb_000116_270 Hb_000599_250 Hb_000599_250 Hb_006478_020--Hb_000599_250 Hb_003025_100 Hb_003025_100 Hb_006478_020--Hb_003025_100 Hb_000172_290 Hb_000172_290 Hb_006478_020--Hb_000172_290 Hb_001971_010 Hb_001971_010 Hb_006478_020--Hb_001971_010 Hb_001366_180 Hb_001366_180 Hb_006478_020--Hb_001366_180 Hb_004157_100 Hb_004157_100 Hb_169631_010--Hb_004157_100 Hb_169631_010--Hb_000249_070 Hb_002660_150 Hb_002660_150 Hb_169631_010--Hb_002660_150 Hb_000107_230 Hb_000107_230 Hb_169631_010--Hb_000107_230 Hb_009049_020 Hb_009049_020 Hb_169631_010--Hb_009049_020 Hb_000249_070--Hb_002685_110 Hb_002235_170 Hb_002235_170 Hb_000249_070--Hb_002235_170 Hb_002445_120 Hb_002445_120 Hb_000249_070--Hb_002445_120 Hb_000107_200 Hb_000107_200 Hb_000249_070--Hb_000107_200 Hb_022833_100 Hb_022833_100 Hb_000249_070--Hb_022833_100 Hb_084247_010 Hb_084247_010 Hb_059480_010--Hb_084247_010 Hb_000522_150 Hb_000522_150 Hb_059480_010--Hb_000522_150 Hb_002445_060 Hb_002445_060 Hb_059480_010--Hb_002445_060 Hb_003929_170 Hb_003929_170 Hb_059480_010--Hb_003929_170 Hb_059480_010--Hb_000107_230 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_004191_020--Hb_006478_020 Hb_004191_020--Hb_001971_010 Hb_008790_030 Hb_008790_030 Hb_004191_020--Hb_008790_030 Hb_024128_020 Hb_024128_020 Hb_004191_020--Hb_024128_020 Hb_017224_030 Hb_017224_030 Hb_002685_110--Hb_017224_030 Hb_003761_010 Hb_003761_010 Hb_002685_110--Hb_003761_010 Hb_005291_030 Hb_005291_030 Hb_002685_110--Hb_005291_030 Hb_002473_130 Hb_002473_130 Hb_002685_110--Hb_002473_130 Hb_000035_320 Hb_000035_320 Hb_002685_110--Hb_000035_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.9177 9.54318 14.4107 27.8541 8.76996 21.8348
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8495 14.8745 17.0871 8.87102 19.2718

CAGE analysis