Hb_008790_030

Information

Type -
Description -
Location Contig8790: 81439-89487
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07760g
description hypothetical protein
nr
ID XP_012077252.1
description PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
swissprot
ID Q8RWH8
description Probable magnesium transporter NIPA9 OS=Arabidopsis thaliana GN=At5g11960 PE=2 SV=1
trembl
ID A0A067KCX5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07647 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable magnesium transporter nipa9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61368: 81542-89424
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008790_030 0.0 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
2 Hb_000415_040 0.0908318417 - - PREDICTED: clathrin interactor EPSIN 2 [Jatropha curcas]
3 Hb_004191_020 0.0918807104 - - PREDICTED: cysteine synthase [Jatropha curcas]
4 Hb_000331_200 0.0941502497 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
5 Hb_019762_020 0.0955835005 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
6 Hb_000173_290 0.096701942 - - guanylate kinase, putative [Ricinus communis]
7 Hb_024128_020 0.0976102823 - - PREDICTED: vacuolar cation/proton exchanger 5-like isoform X1 [Jatropha curcas]
8 Hb_002411_040 0.0979813148 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
9 Hb_001234_100 0.0982047982 - - PREDICTED: eyes absent homolog 2 isoform X1 [Jatropha curcas]
10 Hb_000599_300 0.0997781071 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
11 Hb_005144_050 0.0999685273 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
12 Hb_000141_080 0.1009367578 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
13 Hb_012799_160 0.1012704171 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
14 Hb_001971_010 0.1026303946 - - F23N19.4 [Arabidopsis thaliana]
15 Hb_005305_110 0.1027015748 - - PREDICTED: uncharacterized protein LOC105648286 [Jatropha curcas]
16 Hb_003502_090 0.1030406376 - - ATP synthase subunit d, putative [Ricinus communis]
17 Hb_001252_130 0.1032737557 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
18 Hb_000421_220 0.1041990367 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
19 Hb_000054_090 0.104312831 - - zinc finger protein, putative [Ricinus communis]
20 Hb_000599_250 0.1046383666 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]

Gene co-expression network

sample Hb_008790_030 Hb_008790_030 Hb_000415_040 Hb_000415_040 Hb_008790_030--Hb_000415_040 Hb_004191_020 Hb_004191_020 Hb_008790_030--Hb_004191_020 Hb_000331_200 Hb_000331_200 Hb_008790_030--Hb_000331_200 Hb_019762_020 Hb_019762_020 Hb_008790_030--Hb_019762_020 Hb_000173_290 Hb_000173_290 Hb_008790_030--Hb_000173_290 Hb_024128_020 Hb_024128_020 Hb_008790_030--Hb_024128_020 Hb_000170_070 Hb_000170_070 Hb_000415_040--Hb_000170_070 Hb_001546_060 Hb_001546_060 Hb_000415_040--Hb_001546_060 Hb_000179_220 Hb_000179_220 Hb_000415_040--Hb_000179_220 Hb_001369_750 Hb_001369_750 Hb_000415_040--Hb_001369_750 Hb_005504_060 Hb_005504_060 Hb_000415_040--Hb_005504_060 Hb_002496_020 Hb_002496_020 Hb_004191_020--Hb_002496_020 Hb_000335_030 Hb_000335_030 Hb_004191_020--Hb_000335_030 Hb_006478_020 Hb_006478_020 Hb_004191_020--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_004191_020--Hb_001971_010 Hb_004191_020--Hb_024128_020 Hb_001703_060 Hb_001703_060 Hb_000331_200--Hb_001703_060 Hb_000317_390 Hb_000317_390 Hb_000331_200--Hb_000317_390 Hb_006693_020 Hb_006693_020 Hb_000331_200--Hb_006693_020 Hb_004108_070 Hb_004108_070 Hb_000331_200--Hb_004108_070 Hb_001140_370 Hb_001140_370 Hb_000331_200--Hb_001140_370 Hb_000221_160 Hb_000221_160 Hb_000331_200--Hb_000221_160 Hb_002411_040 Hb_002411_040 Hb_019762_020--Hb_002411_040 Hb_026314_020 Hb_026314_020 Hb_019762_020--Hb_026314_020 Hb_017413_010 Hb_017413_010 Hb_019762_020--Hb_017413_010 Hb_003025_040 Hb_003025_040 Hb_019762_020--Hb_003025_040 Hb_005278_020 Hb_005278_020 Hb_019762_020--Hb_005278_020 Hb_004784_020 Hb_004784_020 Hb_019762_020--Hb_004784_020 Hb_000120_790 Hb_000120_790 Hb_000173_290--Hb_000120_790 Hb_000054_090 Hb_000054_090 Hb_000173_290--Hb_000054_090 Hb_000206_210 Hb_000206_210 Hb_000173_290--Hb_000206_210 Hb_000342_130 Hb_000342_130 Hb_000173_290--Hb_000342_130 Hb_002200_080 Hb_002200_080 Hb_000173_290--Hb_002200_080 Hb_000777_040 Hb_000777_040 Hb_000173_290--Hb_000777_040 Hb_001004_070 Hb_001004_070 Hb_024128_020--Hb_001004_070 Hb_005144_050 Hb_005144_050 Hb_024128_020--Hb_005144_050 Hb_029879_070 Hb_029879_070 Hb_024128_020--Hb_029879_070 Hb_001366_180 Hb_001366_180 Hb_024128_020--Hb_001366_180 Hb_024128_020--Hb_006478_020 Hb_029510_050 Hb_029510_050 Hb_024128_020--Hb_029510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.01866 2.7243 5.01267 13.0492 10.189 9.05994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.6731 12.734 12.1762 6.07821 10.718

CAGE analysis