Hb_002411_040

Information

Type -
Description -
Location Contig2411: 34973-37368
Sequence    

Annotation

kegg
ID pop:POPTR_0003s19140g
description POPTRDRAFT_711772; cysteine proteinase inhibitor
nr
ID XP_012068733.1
description PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
swissprot
ID Q0JNR2
description Cysteine proteinase inhibitor 12 OS=Oryza sativa subsp. japonica GN=Os01g0270100 PE=2 SV=1
trembl
ID A0A067L8Z5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24573 PE=4 SV=1
Gene Ontology
ID GO:0044444
description cysteine proteinase inhibitor 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25253: 35000-37294
cDNA
(Sanger)
(ID:Location)		 018_M14.ab1: 36439-37173 , 023_L17.ab1: 35150-37191 , 031_I07.ab1: 35160-37193 , 038_F10.ab1: 35124-37226 , 051_B06.ab1: 36369-37294

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002411_040 0.0 - - PREDICTED: cysteine proteinase inhibitor 6 [Jatropha curcas]
2 Hb_019762_020 0.077625237 - - PREDICTED: selenoprotein K-like [Nicotiana tomentosiformis]
3 Hb_000331_200 0.0890320955 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
4 Hb_002601_110 0.0942973371 - - PREDICTED: probable histone H2A variant 3 [Jatropha curcas]
5 Hb_000317_390 0.0948843313 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
6 Hb_001703_060 0.0958072457 - - protein kinase, putative [Ricinus communis]
7 Hb_008790_030 0.0979813148 - - PREDICTED: probable magnesium transporter NIPA9 [Jatropha curcas]
8 Hb_001318_250 0.1041290865 - - PREDICTED: uncharacterized protein LOC105642666 [Jatropha curcas]
9 Hb_004108_070 0.106846833 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Jatropha curcas]
10 Hb_006693_020 0.1073374531 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
11 Hb_000141_080 0.1078188575 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial isoform X1 [Brassica rapa]
12 Hb_002518_210 0.1079476611 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
13 Hb_001225_080 0.1111849125 - - PREDICTED: ADP-ribosylation factor-like protein 8A [Populus euphratica]
14 Hb_000599_300 0.1117098492 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
15 Hb_001252_130 0.112150113 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
16 Hb_026314_020 0.1122435788 - - hypothetical protein POPTR_0019s10050g [Populus trichocarpa]
17 Hb_001140_370 0.112425149 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
18 Hb_000994_120 0.1129665655 - - unknown [Populus trichocarpa]
19 Hb_004176_070 0.1131981117 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
20 Hb_001427_160 0.1133291028 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_002411_040 Hb_002411_040 Hb_019762_020 Hb_019762_020 Hb_002411_040--Hb_019762_020 Hb_000331_200 Hb_000331_200 Hb_002411_040--Hb_000331_200 Hb_002601_110 Hb_002601_110 Hb_002411_040--Hb_002601_110 Hb_000317_390 Hb_000317_390 Hb_002411_040--Hb_000317_390 Hb_001703_060 Hb_001703_060 Hb_002411_040--Hb_001703_060 Hb_008790_030 Hb_008790_030 Hb_002411_040--Hb_008790_030 Hb_026314_020 Hb_026314_020 Hb_019762_020--Hb_026314_020 Hb_017413_010 Hb_017413_010 Hb_019762_020--Hb_017413_010 Hb_003025_040 Hb_003025_040 Hb_019762_020--Hb_003025_040 Hb_005278_020 Hb_005278_020 Hb_019762_020--Hb_005278_020 Hb_004784_020 Hb_004784_020 Hb_019762_020--Hb_004784_020 Hb_000331_200--Hb_001703_060 Hb_000331_200--Hb_000317_390 Hb_006693_020 Hb_006693_020 Hb_000331_200--Hb_006693_020 Hb_004108_070 Hb_004108_070 Hb_000331_200--Hb_004108_070 Hb_001140_370 Hb_001140_370 Hb_000331_200--Hb_001140_370 Hb_000221_160 Hb_000221_160 Hb_000331_200--Hb_000221_160 Hb_002820_050 Hb_002820_050 Hb_002601_110--Hb_002820_050 Hb_002245_030 Hb_002245_030 Hb_002601_110--Hb_002245_030 Hb_006059_050 Hb_006059_050 Hb_002601_110--Hb_006059_050 Hb_000111_380 Hb_000111_380 Hb_002601_110--Hb_000111_380 Hb_002601_110--Hb_004108_070 Hb_001124_090 Hb_001124_090 Hb_002601_110--Hb_001124_090 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_000317_390--Hb_004108_070 Hb_000317_390--Hb_006693_020 Hb_000030_030 Hb_000030_030 Hb_001703_060--Hb_000030_030 Hb_000510_300 Hb_000510_300 Hb_001703_060--Hb_000510_300 Hb_001427_160 Hb_001427_160 Hb_001703_060--Hb_001427_160 Hb_001225_080 Hb_001225_080 Hb_001703_060--Hb_001225_080 Hb_000081_160 Hb_000081_160 Hb_001703_060--Hb_000081_160 Hb_000415_040 Hb_000415_040 Hb_008790_030--Hb_000415_040 Hb_004191_020 Hb_004191_020 Hb_008790_030--Hb_004191_020 Hb_008790_030--Hb_000331_200 Hb_008790_030--Hb_019762_020 Hb_000173_290 Hb_000173_290 Hb_008790_030--Hb_000173_290 Hb_024128_020 Hb_024128_020 Hb_008790_030--Hb_024128_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
105.174 53.1715 106.162 227.813 126.051 118.955
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
238.72 212.446 107.491 67.2374 130.645

CAGE analysis