Hb_000221_160

Information

Type -
Description -
Location Contig221: 207026-211211
Sequence    

Annotation

kegg
ID rcu:RCOM_1037110
description cytochrome C oxidase polypeptide vib, putative (EC:1.9.3.1)
nr
ID XP_012067912.1
description PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
swissprot
ID Q9S7L9
description Cytochrome c oxidase subunit 6b-1 OS=Arabidopsis thaliana GN=COX6B-1 PE=1 SV=1
trembl
ID A0A067LA80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15822 PE=4 SV=1
Gene Ontology
ID GO:0005739
description cytochrome c oxidase subunit 6b-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22784: 207148-211240
cDNA
(Sanger)
(ID:Location)		 035_I08.ab1: 207589-211240

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000221_160 0.0 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
2 Hb_003918_010 0.0606032494 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
3 Hb_012053_070 0.065155018 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
4 Hb_000270_370 0.0682757908 - - Uncharacterized protein TCM_011954 [Theobroma cacao]
5 Hb_000363_360 0.0711144012 - - hypothetical protein PRUPE_ppa009146mg [Prunus persica]
6 Hb_000331_200 0.0722848847 - - PREDICTED: adenylate kinase 4 [Jatropha curcas]
7 Hb_033594_150 0.0723573264 - - unknown [Lotus japonicus]
8 Hb_172426_040 0.0757016967 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
9 Hb_001140_370 0.0774636156 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
10 Hb_018124_010 0.0810527079 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
11 Hb_006693_020 0.08157159 - - PREDICTED: frataxin, mitochondrial [Gossypium raimondii]
12 Hb_000020_060 0.0815902976 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
13 Hb_001633_050 0.0816645135 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
14 Hb_152784_010 0.0816993095 - - hypothetical protein PRUPE_ppa010913mg [Prunus persica]
15 Hb_000331_450 0.0829013896 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
16 Hb_000373_120 0.0835630805 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105629120 [Jatropha curcas]
17 Hb_000317_390 0.0836100862 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
18 Hb_000982_090 0.0842330515 - - PREDICTED: zinc finger HIT domain-containing protein 3 [Jatropha curcas]
19 Hb_001369_690 0.0863760224 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
20 Hb_004696_080 0.086756096 - - PREDICTED: uncharacterized protein At1g01500-like [Populus euphratica]

Gene co-expression network

sample Hb_000221_160 Hb_000221_160 Hb_003918_010 Hb_003918_010 Hb_000221_160--Hb_003918_010 Hb_012053_070 Hb_012053_070 Hb_000221_160--Hb_012053_070 Hb_000270_370 Hb_000270_370 Hb_000221_160--Hb_000270_370 Hb_000363_360 Hb_000363_360 Hb_000221_160--Hb_000363_360 Hb_000331_200 Hb_000331_200 Hb_000221_160--Hb_000331_200 Hb_033594_150 Hb_033594_150 Hb_000221_160--Hb_033594_150 Hb_172426_040 Hb_172426_040 Hb_003918_010--Hb_172426_040 Hb_001140_370 Hb_001140_370 Hb_003918_010--Hb_001140_370 Hb_002473_130 Hb_002473_130 Hb_003918_010--Hb_002473_130 Hb_000028_590 Hb_000028_590 Hb_003918_010--Hb_000028_590 Hb_008511_120 Hb_008511_120 Hb_003918_010--Hb_008511_120 Hb_000331_450 Hb_000331_450 Hb_012053_070--Hb_000331_450 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_159809_020 Hb_159809_020 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_027073_040 Hb_027073_040 Hb_000270_370--Hb_027073_040 Hb_000373_120 Hb_000373_120 Hb_000270_370--Hb_000373_120 Hb_000979_230 Hb_000979_230 Hb_000270_370--Hb_000979_230 Hb_000671_090 Hb_000671_090 Hb_000270_370--Hb_000671_090 Hb_033834_040 Hb_033834_040 Hb_000270_370--Hb_033834_040 Hb_000477_060 Hb_000477_060 Hb_000363_360--Hb_000477_060 Hb_000985_060 Hb_000985_060 Hb_000363_360--Hb_000985_060 Hb_003697_040 Hb_003697_040 Hb_000363_360--Hb_003697_040 Hb_000479_190 Hb_000479_190 Hb_000363_360--Hb_000479_190 Hb_000336_240 Hb_000336_240 Hb_000363_360--Hb_000336_240 Hb_001703_060 Hb_001703_060 Hb_000331_200--Hb_001703_060 Hb_000317_390 Hb_000317_390 Hb_000331_200--Hb_000317_390 Hb_006693_020 Hb_006693_020 Hb_000331_200--Hb_006693_020 Hb_004108_070 Hb_004108_070 Hb_000331_200--Hb_004108_070 Hb_000331_200--Hb_001140_370 Hb_152784_010 Hb_152784_010 Hb_033594_150--Hb_152784_010 Hb_033594_150--Hb_000985_060 Hb_029388_030 Hb_029388_030 Hb_033594_150--Hb_029388_030 Hb_010042_010 Hb_010042_010 Hb_033594_150--Hb_010042_010 Hb_018124_010 Hb_018124_010 Hb_033594_150--Hb_018124_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
78.9249 31.2354 50.6556 93.9038 74.6814 68.6995
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
129.112 141.578 103.025 82.9251 40.7994

CAGE analysis