Hb_000331_450

Information

Type -
Description -
Location Contig331: 381036-384771
Sequence    

Annotation

kegg
ID rcu:RCOM_1507340
description 26S proteasome non-atpase regulatory subunit, putative
nr
ID XP_012079902.1
description PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
swissprot
ID Q93Y35
description 26S proteasome non-ATPase regulatory subunit 6 homolog OS=Arabidopsis thaliana GN=RPN7 PE=1 SV=1
trembl
ID A0A067K415
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11347 PE=4 SV=1
Gene Ontology
ID GO:0005515
description 26s proteasome non-atpase regulatory subunit 6 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34803: 381062-384723
cDNA
(Sanger)
(ID:Location)		 006_A02.ab1: 382119-384723 , 038_M08.ab1: 381996-384723

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000331_450 0.0 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
2 Hb_015807_040 0.0487662942 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
3 Hb_010042_010 0.0627338927 - - Urease accessory protein ureD, putative [Ricinus communis]
4 Hb_012053_070 0.0639178026 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]
5 Hb_001369_690 0.0681577569 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
6 Hb_017413_010 0.0710261816 - - -
7 Hb_003125_010 0.071301052 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
8 Hb_002284_240 0.0743026014 - - PREDICTED: coiled-coil domain-containing protein 115 isoform X3 [Jatropha curcas]
9 Hb_004032_010 0.0763975732 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
10 Hb_159809_020 0.0765154831 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001584_190 0.0767363708 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
12 Hb_000103_090 0.0775326273 - - PREDICTED: protein RDM1 [Jatropha curcas]
13 Hb_012799_160 0.0780510602 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
14 Hb_000707_030 0.0787195436 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
15 Hb_001016_030 0.0789836116 - - PREDICTED: uncharacterized protein LOC105636529 isoform X2 [Jatropha curcas]
16 Hb_001140_370 0.0792218617 - - PREDICTED: uncharacterized protein LOC105648463 [Jatropha curcas]
17 Hb_000479_190 0.0814696438 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000221_160 0.0829013896 - - PREDICTED: cytochrome c oxidase subunit 6b-1 [Jatropha curcas]
19 Hb_001421_060 0.0833535433 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
20 Hb_006816_210 0.0838262834 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]

Gene co-expression network

sample Hb_000331_450 Hb_000331_450 Hb_015807_040 Hb_015807_040 Hb_000331_450--Hb_015807_040 Hb_010042_010 Hb_010042_010 Hb_000331_450--Hb_010042_010 Hb_012053_070 Hb_012053_070 Hb_000331_450--Hb_012053_070 Hb_001369_690 Hb_001369_690 Hb_000331_450--Hb_001369_690 Hb_017413_010 Hb_017413_010 Hb_000331_450--Hb_017413_010 Hb_003125_010 Hb_003125_010 Hb_000331_450--Hb_003125_010 Hb_015807_040--Hb_010042_010 Hb_006816_210 Hb_006816_210 Hb_015807_040--Hb_006816_210 Hb_001833_110 Hb_001833_110 Hb_015807_040--Hb_001833_110 Hb_159809_020 Hb_159809_020 Hb_015807_040--Hb_159809_020 Hb_001832_010 Hb_001832_010 Hb_015807_040--Hb_001832_010 Hb_001461_010 Hb_001461_010 Hb_010042_010--Hb_001461_010 Hb_065525_020 Hb_065525_020 Hb_010042_010--Hb_065525_020 Hb_000934_250 Hb_000934_250 Hb_010042_010--Hb_000934_250 Hb_008544_010 Hb_008544_010 Hb_010042_010--Hb_008544_010 Hb_000221_160 Hb_000221_160 Hb_012053_070--Hb_000221_160 Hb_158467_010 Hb_158467_010 Hb_012053_070--Hb_158467_010 Hb_001105_070 Hb_001105_070 Hb_012053_070--Hb_001105_070 Hb_012053_070--Hb_159809_020 Hb_032202_190 Hb_032202_190 Hb_012053_070--Hb_032202_190 Hb_004218_110 Hb_004218_110 Hb_001369_690--Hb_004218_110 Hb_001369_690--Hb_003125_010 Hb_015934_070 Hb_015934_070 Hb_001369_690--Hb_015934_070 Hb_001369_690--Hb_012053_070 Hb_025240_040 Hb_025240_040 Hb_001369_690--Hb_025240_040 Hb_000789_230 Hb_000789_230 Hb_017413_010--Hb_000789_230 Hb_005278_020 Hb_005278_020 Hb_017413_010--Hb_005278_020 Hb_017491_060 Hb_017491_060 Hb_017413_010--Hb_017491_060 Hb_006846_060 Hb_006846_060 Hb_017413_010--Hb_006846_060 Hb_000373_120 Hb_000373_120 Hb_017413_010--Hb_000373_120 Hb_010504_020 Hb_010504_020 Hb_003125_010--Hb_010504_020 Hb_012799_160 Hb_012799_160 Hb_003125_010--Hb_012799_160 Hb_002473_130 Hb_002473_130 Hb_003125_010--Hb_002473_130 Hb_172426_040 Hb_172426_040 Hb_003125_010--Hb_172426_040 Hb_003125_010--Hb_025240_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.0744 19.6727 21.6463 54.8675 49.3811 60.3637
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.8218 88.8953 58.067 37.9876 27.5313

CAGE analysis