Hb_008544_010

Information

Type transcription factor
Description TF Family: C2C2-LSD
Location Contig8544: 7169-9478
Sequence    

Annotation

kegg
ID pop:POPTR_0001s43300g
description POPTRDRAFT_815833; LESION SIMULATING DISEASE family protein
nr
ID XP_012075549.1
description PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
swissprot
ID P94077
description Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1
trembl
ID A0A067KSR6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09172 PE=4 SV=1
Gene Ontology
ID GO:0005634
description lsd1-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60525: 7095-53518
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008544_010 0.0 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]
2 Hb_004374_140 0.0527142637 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
3 Hb_001461_010 0.0595211964 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
4 Hb_000172_030 0.0730635147 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
5 Hb_004336_050 0.0744763445 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
6 Hb_001191_090 0.077611255 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
7 Hb_000046_290 0.077753979 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
8 Hb_010042_010 0.0778536445 - - Urease accessory protein ureD, putative [Ricinus communis]
9 Hb_007926_060 0.083620708 - - ubiquitin-conjugating enzyme E2 variant 1D [Arabidopsis thaliana]
10 Hb_002471_080 0.0875593551 - - oxidoreductase, putative [Ricinus communis]
11 Hb_000963_180 0.0892702182 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
12 Hb_000024_030 0.0897000328 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
13 Hb_002631_020 0.0935159707 - - PREDICTED: protein FAM32A-like [Jatropha curcas]
14 Hb_124755_010 0.094103818 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
15 Hb_004449_200 0.0942958412 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 1 [Populus euphratica]
16 Hb_003632_010 0.0949220841 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001829_060 0.0951886273 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
18 Hb_029866_070 0.0954960747 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
19 Hb_180301_010 0.0954979835 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
20 Hb_003964_100 0.0973258779 - - PREDICTED: uncharacterized protein LOC103489178 [Cucumis melo]

Gene co-expression network

sample Hb_008544_010 Hb_008544_010 Hb_004374_140 Hb_004374_140 Hb_008544_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_008544_010--Hb_001461_010 Hb_000172_030 Hb_000172_030 Hb_008544_010--Hb_000172_030 Hb_004336_050 Hb_004336_050 Hb_008544_010--Hb_004336_050 Hb_001191_090 Hb_001191_090 Hb_008544_010--Hb_001191_090 Hb_000046_290 Hb_000046_290 Hb_008544_010--Hb_000046_290 Hb_004374_140--Hb_001461_010 Hb_004374_140--Hb_004336_050 Hb_180301_010 Hb_180301_010 Hb_004374_140--Hb_180301_010 Hb_002631_020 Hb_002631_020 Hb_004374_140--Hb_002631_020 Hb_124755_010 Hb_124755_010 Hb_004374_140--Hb_124755_010 Hb_001842_040 Hb_001842_040 Hb_001461_010--Hb_001842_040 Hb_010042_010 Hb_010042_010 Hb_001461_010--Hb_010042_010 Hb_001461_010--Hb_002631_020 Hb_000985_060 Hb_000985_060 Hb_001461_010--Hb_000985_060 Hb_000787_140 Hb_000787_140 Hb_000172_030--Hb_000787_140 Hb_000751_130 Hb_000751_130 Hb_000172_030--Hb_000751_130 Hb_000087_020 Hb_000087_020 Hb_000172_030--Hb_000087_020 Hb_000172_030--Hb_180301_010 Hb_001437_230 Hb_001437_230 Hb_000172_030--Hb_001437_230 Hb_000672_120 Hb_000672_120 Hb_004336_050--Hb_000672_120 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_000173_220 Hb_000173_220 Hb_001191_090--Hb_000173_220 Hb_003053_030 Hb_003053_030 Hb_001191_090--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_001191_090--Hb_148200_010 Hb_006573_220 Hb_006573_220 Hb_001191_090--Hb_006573_220 Hb_000181_300 Hb_000181_300 Hb_001191_090--Hb_000181_300 Hb_003376_030 Hb_003376_030 Hb_001191_090--Hb_003376_030 Hb_002471_080 Hb_002471_080 Hb_000046_290--Hb_002471_080 Hb_027625_010 Hb_027625_010 Hb_000046_290--Hb_027625_010 Hb_001775_110 Hb_001775_110 Hb_000046_290--Hb_001775_110 Hb_001360_050 Hb_001360_050 Hb_000046_290--Hb_001360_050 Hb_000046_290--Hb_001191_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
55.759 15.6455 30.7439 72.1816 53.8623 102.813
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
175.669 162.094 151.29 39.1019 45.4694

CAGE analysis