Hb_172706_030

Information

Type -
Description -
Location Contig172706: 33315-36131
Sequence    

Annotation

kegg
ID rcu:RCOM_0641420
description hypothetical protein
nr
ID XP_012080707.1
description PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
swissprot
ID Q14657
description EKC/KEOPS complex subunit LAGE3 OS=Homo sapiens GN=LAGE3 PE=1 SV=2
trembl
ID B9S7G1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0641420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16377: 33347-36079
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_172706_030 0.0 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
2 Hb_004336_050 0.0706406341 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
3 Hb_140543_010 0.0784391894 - - -
4 Hb_000672_120 0.0874346849 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
5 Hb_002878_010 0.0972522314 - - -
6 Hb_001504_080 0.1001239675 - - golgi snare 11 protein, putative [Ricinus communis]
7 Hb_000364_020 0.102695456 - - PREDICTED: SUMO-conjugating enzyme SCE1 isoform X2 [Populus euphratica]
8 Hb_000326_090 0.1028868617 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
9 Hb_000086_550 0.1032919623 - - Os02g0814700 [Oryza sativa Japonica Group]
10 Hb_005357_130 0.1035566588 - - hypothetical protein L484_012905 [Morus notabilis]
11 Hb_005588_070 0.1042731199 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
12 Hb_007735_030 0.1044601706 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
13 Hb_130235_010 0.1081152624 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
14 Hb_001307_090 0.1104800866 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
15 Hb_006816_210 0.1106614194 - - PREDICTED: GTP-binding protein SAR1A [Nelumbo nucifera]
16 Hb_010812_010 0.111408044 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
17 Hb_011161_050 0.1114754598 - - PREDICTED: uncharacterized protein LOC105127832 isoform X2 [Populus euphratica]
18 Hb_005400_030 0.1125337456 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
19 Hb_014834_030 0.1131341702 - - -
20 Hb_180301_010 0.1133143668 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_172706_030 Hb_172706_030 Hb_004336_050 Hb_004336_050 Hb_172706_030--Hb_004336_050 Hb_140543_010 Hb_140543_010 Hb_172706_030--Hb_140543_010 Hb_000672_120 Hb_000672_120 Hb_172706_030--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_172706_030--Hb_002878_010 Hb_001504_080 Hb_001504_080 Hb_172706_030--Hb_001504_080 Hb_000364_020 Hb_000364_020 Hb_172706_030--Hb_000364_020 Hb_004336_050--Hb_000672_120 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_180301_010 Hb_180301_010 Hb_004336_050--Hb_180301_010 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_001754_070 Hb_001754_070 Hb_140543_010--Hb_001754_070 Hb_130235_010 Hb_130235_010 Hb_140543_010--Hb_130235_010 Hb_000656_340 Hb_000656_340 Hb_140543_010--Hb_000656_340 Hb_000086_550 Hb_000086_550 Hb_140543_010--Hb_000086_550 Hb_005357_130 Hb_005357_130 Hb_140543_010--Hb_005357_130 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_005588_070 Hb_005588_070 Hb_000672_120--Hb_005588_070 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_000672_120--Hb_001307_090 Hb_001953_090 Hb_001953_090 Hb_002878_010--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_002878_010--Hb_000322_140 Hb_002878_010--Hb_004336_050 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_001504_080--Hb_004336_050 Hb_001504_080--Hb_180301_010 Hb_012653_040 Hb_012653_040 Hb_001504_080--Hb_012653_040 Hb_037887_010 Hb_037887_010 Hb_001504_080--Hb_037887_010 Hb_000083_170 Hb_000083_170 Hb_001504_080--Hb_000083_170 Hb_001504_080--Hb_005588_070 Hb_011161_050 Hb_011161_050 Hb_000364_020--Hb_011161_050 Hb_000364_020--Hb_000086_550 Hb_000283_110 Hb_000283_110 Hb_000364_020--Hb_000283_110 Hb_000364_020--Hb_004336_050 Hb_000975_110 Hb_000975_110 Hb_000364_020--Hb_000975_110 Hb_000751_130 Hb_000751_130 Hb_000364_020--Hb_000751_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.3202 3.22693 8.05547 39.5318 13.6472 51.5413
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.7109 74.368 35.1162 20.215 16.9819

CAGE analysis