Hb_005588_070

Information

Type -
Description -
Location Contig5588: 47618-47998
Sequence    

Annotation

kegg
ID rcu:RCOM_1591250
description hypothetical protein
nr
ID KDP38373.1
description hypothetical protein JCGZ_04298 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KTS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04298 PE=4 SV=1
Gene Ontology
ID GO:0031514
description intraflagellar transport protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48626: 45841-48557 , PASA_asmbl_48627: 45906-48530
cDNA
(Sanger)
(ID:Location)		 052_E10.ab1: 47637-48557

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005588_070 0.0 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
2 Hb_004336_050 0.0818146691 - - hypothetical protein JCGZ_26651 [Jatropha curcas]
3 Hb_012675_070 0.0899634794 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Pyrus x bretschneideri]
4 Hb_180301_010 0.0981435164 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
5 Hb_001504_080 0.0996416227 - - golgi snare 11 protein, putative [Ricinus communis]
6 Hb_000672_120 0.0998567084 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
7 Hb_002878_010 0.1022295003 - - -
8 Hb_000083_170 0.1026886521 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
9 Hb_172706_030 0.1042731199 - - PREDICTED: uncharacterized protein LOC105640907 [Jatropha curcas]
10 Hb_004374_140 0.1050566064 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
11 Hb_029866_070 0.1104698787 - - PREDICTED: myosin IB heavy chain [Jatropha curcas]
12 Hb_005867_020 0.111046587 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
13 Hb_001461_010 0.1113766759 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
14 Hb_012653_040 0.1115794705 - - UV-induced protein uvi31, putative [Ricinus communis]
15 Hb_000224_120 0.1116413038 - - eukaryotic translation initiation factor 1Aa [Hevea brasiliensis]
16 Hb_037887_010 0.1117657531 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_004602_030 0.1131786357 - - histone H4 [Zea mays]
18 Hb_011457_090 0.1179244403 - - PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Jatropha curcas]
19 Hb_000322_140 0.1179854368 - - hypothetical protein RCOM_1047200 [Ricinus communis]
20 Hb_008544_010 0.1186447601 transcription factor TF Family: C2C2-LSD PREDICTED: protein LSD1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005588_070 Hb_005588_070 Hb_004336_050 Hb_004336_050 Hb_005588_070--Hb_004336_050 Hb_012675_070 Hb_012675_070 Hb_005588_070--Hb_012675_070 Hb_180301_010 Hb_180301_010 Hb_005588_070--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_005588_070--Hb_001504_080 Hb_000672_120 Hb_000672_120 Hb_005588_070--Hb_000672_120 Hb_002878_010 Hb_002878_010 Hb_005588_070--Hb_002878_010 Hb_004336_050--Hb_000672_120 Hb_004374_140 Hb_004374_140 Hb_004336_050--Hb_004374_140 Hb_004336_050--Hb_180301_010 Hb_172706_030 Hb_172706_030 Hb_004336_050--Hb_172706_030 Hb_008544_010 Hb_008544_010 Hb_004336_050--Hb_008544_010 Hb_001307_090 Hb_001307_090 Hb_004336_050--Hb_001307_090 Hb_002259_160 Hb_002259_160 Hb_012675_070--Hb_002259_160 Hb_000083_170 Hb_000083_170 Hb_012675_070--Hb_000083_170 Hb_003352_040 Hb_003352_040 Hb_012675_070--Hb_003352_040 Hb_037887_010 Hb_037887_010 Hb_012675_070--Hb_037887_010 Hb_005400_030 Hb_005400_030 Hb_012675_070--Hb_005400_030 Hb_004032_100 Hb_004032_100 Hb_180301_010--Hb_004032_100 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_180301_010--Hb_004374_140 Hb_000751_130 Hb_000751_130 Hb_180301_010--Hb_000751_130 Hb_007735_030 Hb_007735_030 Hb_180301_010--Hb_007735_030 Hb_001504_080--Hb_004336_050 Hb_001504_080--Hb_180301_010 Hb_012653_040 Hb_012653_040 Hb_001504_080--Hb_012653_040 Hb_001504_080--Hb_037887_010 Hb_001504_080--Hb_000083_170 Hb_007594_090 Hb_007594_090 Hb_000672_120--Hb_007594_090 Hb_000672_120--Hb_172706_030 Hb_000224_120 Hb_000224_120 Hb_000672_120--Hb_000224_120 Hb_000672_120--Hb_001307_090 Hb_001953_090 Hb_001953_090 Hb_002878_010--Hb_001953_090 Hb_000322_140 Hb_000322_140 Hb_002878_010--Hb_000322_140 Hb_002878_010--Hb_004336_050 Hb_002878_010--Hb_004374_140 Hb_001461_010 Hb_001461_010 Hb_002878_010--Hb_001461_010 Hb_002878_010--Hb_172706_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.99557 2.69477 5.32299 18.8918 5.54058 26.1661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.4554 30.1352 25.7698 5.66637 5.94945

CAGE analysis