Hb_007735_030

Information

Type -
Description -
Location Contig7735: 8706-14298
Sequence    

Annotation

kegg
ID tcc:TCM_027292
description Calcium-binding EF-hand family protein isoform 1
nr
ID XP_007023301.1
description Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
swissprot
ID P42322
description Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1
trembl
ID A0A061G917
description Calcium-binding EF-hand family protein isoform 1 OS=Theobroma cacao GN=TCM_027292 PE=4 SV=1
Gene Ontology
ID GO:0005773
description calcineurin subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57704: 9351-9655 , PASA_asmbl_57705: 10511-13651
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007735_030 0.0 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
2 Hb_004032_100 0.0756332228 - - PREDICTED: regulator of nonsense transcripts UPF3-like [Jatropha curcas]
3 Hb_000707_030 0.0774741058 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
4 Hb_005400_030 0.0782397955 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
5 Hb_002296_040 0.0805915103 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
6 Hb_180301_010 0.0840150824 - - PREDICTED: uncharacterized protein LOC105647918 isoform X1 [Jatropha curcas]
7 Hb_000024_030 0.0894398737 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
8 Hb_000086_550 0.0897513313 - - Os02g0814700 [Oryza sativa Japonica Group]
9 Hb_006816_530 0.0907293431 - - 60S ribosomal protein L18, putative [Ricinus communis]
10 Hb_002596_040 0.0919346676 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
11 Hb_000975_110 0.0942857022 - - PREDICTED: ubiquitin-conjugating enzyme E2 7 [Jatropha curcas]
12 Hb_000030_220 0.0943728353 - - PREDICTED: uncharacterized protein LOC105650405 [Jatropha curcas]
13 Hb_076693_030 0.0961604949 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
14 Hb_130235_010 0.0990932178 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
15 Hb_008511_110 0.0993016898 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
16 Hb_001421_060 0.0999222849 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
17 Hb_000331_450 0.0999928819 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
18 Hb_000003_730 0.1002199341 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
19 Hb_000024_080 0.1003484294 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
20 Hb_005398_030 0.1014716637 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_007735_030 Hb_007735_030 Hb_004032_100 Hb_004032_100 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_002296_040 Hb_002296_040 Hb_007735_030--Hb_002296_040 Hb_180301_010 Hb_180301_010 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030 Hb_000024_080 Hb_000024_080 Hb_004032_100--Hb_000024_080 Hb_000087_020 Hb_000087_020 Hb_004032_100--Hb_000087_020 Hb_000751_130 Hb_000751_130 Hb_004032_100--Hb_000751_130 Hb_004032_100--Hb_180301_010 Hb_000787_140 Hb_000787_140 Hb_004032_100--Hb_000787_140 Hb_000085_320 Hb_000085_320 Hb_004032_100--Hb_000085_320 Hb_009793_010 Hb_009793_010 Hb_000707_030--Hb_009793_010 Hb_000707_030--Hb_004032_100 Hb_000331_450 Hb_000331_450 Hb_000707_030--Hb_000331_450 Hb_000707_030--Hb_002296_040 Hb_004032_010 Hb_004032_010 Hb_000707_030--Hb_004032_010 Hb_005400_030--Hb_004032_100 Hb_000152_550 Hb_000152_550 Hb_005400_030--Hb_000152_550 Hb_000086_550 Hb_000086_550 Hb_005400_030--Hb_000086_550 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_004336_050 Hb_004336_050 Hb_180301_010--Hb_004336_050 Hb_000172_030 Hb_000172_030 Hb_180301_010--Hb_000172_030 Hb_004374_140 Hb_004374_140 Hb_180301_010--Hb_004374_140 Hb_180301_010--Hb_000751_130 Hb_000975_110 Hb_000975_110 Hb_000024_030--Hb_000975_110 Hb_001433_050 Hb_001433_050 Hb_000024_030--Hb_001433_050 Hb_124755_010 Hb_124755_010 Hb_000024_030--Hb_124755_010 Hb_000024_030--Hb_004032_100 Hb_006816_530 Hb_006816_530 Hb_000024_030--Hb_006816_530 Hb_002471_080 Hb_002471_080 Hb_000024_030--Hb_002471_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.92122 5.01495 3.2163 12.8765 6.6791 20.2852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.3507 24.2423 12.8379 10.1236 4.86309

CAGE analysis