Hb_002662_030

Information

Type -
Description -
Location Contig2662: 39361-43971
Sequence    

Annotation

kegg
ID rcu:RCOM_1589330
description Mannose-P-dolichol utilization defect 1 protein, putative
nr
ID XP_012068295.1
description PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
swissprot
ID Q8VY63
description Mannose-P-dolichol utilization defect 1 protein homolog 2 OS=Arabidopsis thaliana GN=At4g07390 PE=2 SV=1
trembl
ID A0A067LB21
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16097 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27807: 39305-43953 , PASA_asmbl_27808: 39759-43018
cDNA
(Sanger)
(ID:Location)		 046_I13.ab1: 39711-43953

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002662_030 0.0 - - PREDICTED: mannose-P-dolichol utilization defect 1 protein homolog 2 [Jatropha curcas]
2 Hb_002296_040 0.0770969077 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
3 Hb_002596_040 0.0864189528 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
4 Hb_000792_130 0.0889253783 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
5 Hb_008695_040 0.0943626029 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
6 Hb_005400_030 0.0978531486 - - PREDICTED: LYR motif-containing protein At3g19508 [Jatropha curcas]
7 Hb_000656_170 0.1032669787 - - lsm1, putative [Ricinus communis]
8 Hb_001421_060 0.1036088674 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
9 Hb_007735_030 0.1056593883 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
10 Hb_010423_040 0.105950046 - - hypothetical protein JCGZ_17463 [Jatropha curcas]
11 Hb_003038_210 0.1077299037 - - hypothetical protein B456_006G076400 [Gossypium raimondii]
12 Hb_000111_380 0.1086199427 - - PREDICTED: cilia- and flagella-associated protein 20 [Jatropha curcas]
13 Hb_006541_010 0.1088664595 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
14 Hb_007441_040 0.1100900373 - - PREDICTED: protein mago nashi homolog [Jatropha curcas]
15 Hb_076693_030 0.1107837701 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
16 Hb_033153_090 0.1120063973 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
17 Hb_002473_130 0.1140422088 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
18 Hb_002016_120 0.114550976 - - PREDICTED: uncharacterized protein OsI_027940 [Jatropha curcas]
19 Hb_003633_030 0.115374204 - - f-actin capping protein alpha, putative [Ricinus communis]
20 Hb_004055_070 0.115878702 - - PREDICTED: uncharacterized protein LOC105631439 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002662_030 Hb_002662_030 Hb_002296_040 Hb_002296_040 Hb_002662_030--Hb_002296_040 Hb_002596_040 Hb_002596_040 Hb_002662_030--Hb_002596_040 Hb_000792_130 Hb_000792_130 Hb_002662_030--Hb_000792_130 Hb_008695_040 Hb_008695_040 Hb_002662_030--Hb_008695_040 Hb_005400_030 Hb_005400_030 Hb_002662_030--Hb_005400_030 Hb_000656_170 Hb_000656_170 Hb_002662_030--Hb_000656_170 Hb_002296_040--Hb_002596_040 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000326_090 Hb_000326_090 Hb_002296_040--Hb_000326_090 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030 Hb_076693_030 Hb_076693_030 Hb_002596_040--Hb_076693_030 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_000152_420 Hb_000152_420 Hb_000792_130--Hb_000152_420 Hb_000102_020 Hb_000102_020 Hb_000792_130--Hb_000102_020 Hb_000792_130--Hb_000656_170 Hb_005054_350 Hb_005054_350 Hb_000792_130--Hb_005054_350 Hb_000982_090 Hb_000982_090 Hb_000792_130--Hb_000982_090 Hb_000840_190 Hb_000840_190 Hb_008695_040--Hb_000840_190 Hb_001824_010 Hb_001824_010 Hb_008695_040--Hb_001824_010 Hb_008695_040--Hb_001421_060 Hb_008695_040--Hb_076693_030 Hb_002805_220 Hb_002805_220 Hb_008695_040--Hb_002805_220 Hb_004032_100 Hb_004032_100 Hb_005400_030--Hb_004032_100 Hb_005400_030--Hb_007735_030 Hb_000152_550 Hb_000152_550 Hb_005400_030--Hb_000152_550 Hb_000086_550 Hb_000086_550 Hb_005400_030--Hb_000086_550 Hb_000024_080 Hb_000024_080 Hb_005400_030--Hb_000024_080 Hb_148209_080 Hb_148209_080 Hb_005400_030--Hb_148209_080 Hb_004032_010 Hb_004032_010 Hb_000656_170--Hb_004032_010 Hb_003108_020 Hb_003108_020 Hb_000656_170--Hb_003108_020 Hb_000656_170--Hb_000102_020 Hb_009051_030 Hb_009051_030 Hb_000656_170--Hb_009051_030 Hb_007441_040 Hb_007441_040 Hb_000656_170--Hb_007441_040 Hb_000479_190 Hb_000479_190 Hb_000656_170--Hb_000479_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.86351 3.0546 6.99851 8.62329 5.82004 17.4378
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.6146 19.6028 8.73982 10.5138 5.7597

CAGE analysis