Hb_076693_030

Information

Type -
Description -
Location Contig76693: 21948-27359
Sequence    

Annotation

kegg
ID cic:CICLE_v10021764mg
description hypothetical protein
nr
ID XP_011033545.1
description PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
swissprot
ID O22315
description Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1
trembl
ID A0A0D2SCC4
description Gossypium raimondii chromosome 7, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_007G128300 PE=4 SV=1
Gene Ontology
ID GO:0000166
description pre-mrna-splicing factor sf2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57437: 21544-27787 , PASA_asmbl_57439: 22489-24736 , PASA_asmbl_57440: 21544-26325 , PASA_asmbl_57441: 25778-26389 , PASA_asmbl_57442: 26469-26742 , PASA_asmbl_57443: 23388-24047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_076693_030 0.0 - - PREDICTED: serine/arginine-rich-splicing factor SR34-like [Populus euphratica]
2 Hb_001047_240 0.0546971088 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 20-like [Jatropha curcas]
3 Hb_002596_040 0.0757215721 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
4 Hb_001824_010 0.0842314648 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
5 Hb_008695_040 0.0850631448 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
6 Hb_007875_030 0.0937260077 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]
7 Hb_007735_030 0.0961604949 - - Calcium-binding EF-hand family protein isoform 1 [Theobroma cacao]
8 Hb_000331_450 0.0981673722 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
9 Hb_003878_010 0.1020995463 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
10 Hb_002296_040 0.1054524254 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
11 Hb_000792_130 0.1056190104 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
12 Hb_000207_400 0.1066343468 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
13 Hb_001421_060 0.107912476 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
14 Hb_000707_030 0.1085792139 - - PREDICTED: probable proteasome inhibitor [Vitis vinifera]
15 Hb_003918_010 0.1086197187 - - PREDICTED: biotin--protein ligase 2-like [Jatropha curcas]
16 Hb_032717_080 0.1087006364 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
17 Hb_015807_040 0.1088605526 - - PREDICTED: polycomb group protein FERTILIZATION-INDEPENDENT ENDOSPERM [Jatropha curcas]
18 Hb_010042_010 0.1096064745 - - Urease accessory protein ureD, putative [Ricinus communis]
19 Hb_001653_020 0.1098597581 transcription factor TF Family: C2H2 rar1, putative [Ricinus communis]
20 Hb_004784_020 0.1100280252 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]

Gene co-expression network

sample Hb_076693_030 Hb_076693_030 Hb_001047_240 Hb_001047_240 Hb_076693_030--Hb_001047_240 Hb_002596_040 Hb_002596_040 Hb_076693_030--Hb_002596_040 Hb_001824_010 Hb_001824_010 Hb_076693_030--Hb_001824_010 Hb_008695_040 Hb_008695_040 Hb_076693_030--Hb_008695_040 Hb_007875_030 Hb_007875_030 Hb_076693_030--Hb_007875_030 Hb_007735_030 Hb_007735_030 Hb_076693_030--Hb_007735_030 Hb_001047_240--Hb_007875_030 Hb_004784_020 Hb_004784_020 Hb_001047_240--Hb_004784_020 Hb_004162_210 Hb_004162_210 Hb_001047_240--Hb_004162_210 Hb_000331_450 Hb_000331_450 Hb_001047_240--Hb_000331_450 Hb_001318_250 Hb_001318_250 Hb_001047_240--Hb_001318_250 Hb_002296_040 Hb_002296_040 Hb_002596_040--Hb_002296_040 Hb_002596_040--Hb_008695_040 Hb_001421_060 Hb_001421_060 Hb_002596_040--Hb_001421_060 Hb_010180_010 Hb_010180_010 Hb_002596_040--Hb_010180_010 Hb_002662_030 Hb_002662_030 Hb_002596_040--Hb_002662_030 Hb_001824_010--Hb_008695_040 Hb_001824_010--Hb_001421_060 Hb_001824_010--Hb_002596_040 Hb_000840_190 Hb_000840_190 Hb_001824_010--Hb_000840_190 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020 Hb_008695_040--Hb_000840_190 Hb_008695_040--Hb_001421_060 Hb_002805_220 Hb_002805_220 Hb_008695_040--Hb_002805_220 Hb_003878_010 Hb_003878_010 Hb_007875_030--Hb_003878_010 Hb_002893_050 Hb_002893_050 Hb_007875_030--Hb_002893_050 Hb_000610_050 Hb_000610_050 Hb_007875_030--Hb_000610_050 Hb_024071_020 Hb_024071_020 Hb_007875_030--Hb_024071_020 Hb_001140_370 Hb_001140_370 Hb_007875_030--Hb_001140_370 Hb_004032_100 Hb_004032_100 Hb_007735_030--Hb_004032_100 Hb_000707_030 Hb_000707_030 Hb_007735_030--Hb_000707_030 Hb_005400_030 Hb_005400_030 Hb_007735_030--Hb_005400_030 Hb_007735_030--Hb_002296_040 Hb_180301_010 Hb_180301_010 Hb_007735_030--Hb_180301_010 Hb_000024_030 Hb_000024_030 Hb_007735_030--Hb_000024_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.5918 9.2611 10.6352 22.9939 12.7763 26.7817
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.2642 30.4791 16.1594 18.2865 6.36125

CAGE analysis