Hb_000840_190

Information

Type -
Description -
Location Contig840: 125352-128175
Sequence    

Annotation

kegg
ID rcu:RCOM_1731780
description 60S ribosomal protein L10, mitochondrial, putative
nr
ID XP_002522195.1
description 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
swissprot
ID A9W4S1
description 50S ribosomal protein L15 OS=Methylobacterium extorquens (strain PA1) GN=rplO PE=3 SV=1
trembl
ID B9S876
description 60S ribosomal protein L10, mitochondrial, putative OS=Ricinus communis GN=RCOM_1731780 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60082: 121775-124727
cDNA
(Sanger)
(ID:Location)		 027_G01.ab1: 125392-128003 , 031_K11.ab1: 125307-127986 , 041_G08.ab1: 125307-127946

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000840_190 0.0 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
2 Hb_008695_040 0.070055328 - - PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Jatropha curcas]
3 Hb_010883_150 0.0784108473 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
4 Hb_046157_020 0.0824021506 - - PREDICTED: uncharacterized protein LOC105647566 [Jatropha curcas]
5 Hb_001421_060 0.0862254143 - - PREDICTED: tobamovirus multiplication protein 2B isoform X2 [Jatropha curcas]
6 Hb_001824_010 0.0930152371 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]
7 Hb_000086_550 0.0931809137 - - Os02g0814700 [Oryza sativa Japonica Group]
8 Hb_002596_040 0.0934851608 - - PREDICTED: uncharacterized protein LOC105645264 isoform X2 [Jatropha curcas]
9 Hb_004297_070 0.096386841 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
10 Hb_032717_080 0.0975490004 - - gamma-soluble nsf attachment protein, putative [Ricinus communis]
11 Hb_002311_320 0.0984272324 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
12 Hb_000317_340 0.0985207698 - - conserved hypothetical protein [Ricinus communis]
13 Hb_033153_090 0.0990109254 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
14 Hb_070986_010 0.0992623134 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
15 Hb_002685_190 0.1021322368 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
16 Hb_000505_140 0.1022108292 - - PREDICTED: actin-related protein 2/3 complex subunit 3 [Populus euphratica]
17 Hb_032202_090 0.1034464415 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
18 Hb_003599_040 0.1039074382 - - unnamed protein product [Vitis vinifera]
19 Hb_086703_010 0.104032248 - - PREDICTED: F-box protein At5g52880 [Jatropha curcas]
20 Hb_006816_530 0.1044208341 - - 60S ribosomal protein L18, putative [Ricinus communis]

Gene co-expression network

sample Hb_000840_190 Hb_000840_190 Hb_008695_040 Hb_008695_040 Hb_000840_190--Hb_008695_040 Hb_010883_150 Hb_010883_150 Hb_000840_190--Hb_010883_150 Hb_046157_020 Hb_046157_020 Hb_000840_190--Hb_046157_020 Hb_001421_060 Hb_001421_060 Hb_000840_190--Hb_001421_060 Hb_001824_010 Hb_001824_010 Hb_000840_190--Hb_001824_010 Hb_000086_550 Hb_000086_550 Hb_000840_190--Hb_000086_550 Hb_008695_040--Hb_001824_010 Hb_008695_040--Hb_001421_060 Hb_002596_040 Hb_002596_040 Hb_008695_040--Hb_002596_040 Hb_076693_030 Hb_076693_030 Hb_008695_040--Hb_076693_030 Hb_002805_220 Hb_002805_220 Hb_008695_040--Hb_002805_220 Hb_001584_070 Hb_001584_070 Hb_010883_150--Hb_001584_070 Hb_008847_020 Hb_008847_020 Hb_010883_150--Hb_008847_020 Hb_000526_150 Hb_000526_150 Hb_010883_150--Hb_000526_150 Hb_002311_320 Hb_002311_320 Hb_010883_150--Hb_002311_320 Hb_000061_330 Hb_000061_330 Hb_010883_150--Hb_000061_330 Hb_032717_080 Hb_032717_080 Hb_046157_020--Hb_032717_080 Hb_004204_120 Hb_004204_120 Hb_046157_020--Hb_004204_120 Hb_117134_010 Hb_117134_010 Hb_046157_020--Hb_117134_010 Hb_000317_340 Hb_000317_340 Hb_046157_020--Hb_000317_340 Hb_005997_010 Hb_005997_010 Hb_046157_020--Hb_005997_010 Hb_003599_040 Hb_003599_040 Hb_001421_060--Hb_003599_040 Hb_000373_120 Hb_000373_120 Hb_001421_060--Hb_000373_120 Hb_001016_030 Hb_001016_030 Hb_001421_060--Hb_001016_030 Hb_000103_090 Hb_000103_090 Hb_001421_060--Hb_000103_090 Hb_006816_530 Hb_006816_530 Hb_001421_060--Hb_006816_530 Hb_015807_040 Hb_015807_040 Hb_001421_060--Hb_015807_040 Hb_001824_010--Hb_001421_060 Hb_001824_010--Hb_076693_030 Hb_001824_010--Hb_002596_040 Hb_008699_020 Hb_008699_020 Hb_001824_010--Hb_008699_020 Hb_005357_130 Hb_005357_130 Hb_000086_550--Hb_005357_130 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.6172 4.193 4.82043 9.67256 9.46579 19.9081
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.8837 28.2306 8.5059 10.9749 4.48432

CAGE analysis