Hb_005997_010

Information

Type -
Description -
Location Contig5997: 9993-11842
Sequence    

Annotation

kegg
ID tcc:TCM_007688
description Dihydroorotate dehydrogenase, putative isoform 1
nr
ID XP_010103622.1
description Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
swissprot
ID Q7XKC8
description Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Oryza sativa subsp. japonica GN=PYRD PE=2 SV=1
trembl
ID W9SAT0
description Dihydroorotate dehydrogenase (quinone), mitochondrial OS=Morus notabilis GN=L484_023120 PE=3 SV=1
Gene Ontology
ID GO:0005743
description dihydroorotate dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005997_010 0.0 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
2 Hb_003020_230 0.0536654709 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
3 Hb_004837_140 0.0593614734 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
4 Hb_009954_040 0.0618872515 - - PREDICTED: putative golgin subfamily A member 6-like protein 6 [Jatropha curcas]
5 Hb_000087_020 0.0637571128 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
6 Hb_001824_070 0.0648597847 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
7 Hb_000371_080 0.0650686703 - - ubiquitin-conjugating enzyme m, putative [Ricinus communis]
8 Hb_000465_060 0.0650829694 - - PREDICTED: 60S ribosomal protein L15-1 isoform X2 [Jatropha curcas]
9 Hb_000444_050 0.0665101448 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
10 Hb_000170_010 0.0682998659 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_001691_210 0.0700928162 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
12 Hb_000317_340 0.0709049044 - - conserved hypothetical protein [Ricinus communis]
13 Hb_004595_020 0.0722095225 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
14 Hb_001584_070 0.0728146409 - - conserved hypothetical protein [Ricinus communis]
15 Hb_009711_030 0.0732137891 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
16 Hb_005686_110 0.0759745408 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
17 Hb_002097_110 0.0782505172 - - ankyrin repeat-containing protein, putative [Ricinus communis]
18 Hb_012515_010 0.0784171592 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
19 Hb_001383_060 0.0787910021 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_012338_010 0.0789215548 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005997_010 Hb_005997_010 Hb_003020_230 Hb_003020_230 Hb_005997_010--Hb_003020_230 Hb_004837_140 Hb_004837_140 Hb_005997_010--Hb_004837_140 Hb_009954_040 Hb_009954_040 Hb_005997_010--Hb_009954_040 Hb_000087_020 Hb_000087_020 Hb_005997_010--Hb_000087_020 Hb_001824_070 Hb_001824_070 Hb_005997_010--Hb_001824_070 Hb_000371_080 Hb_000371_080 Hb_005997_010--Hb_000371_080 Hb_003020_230--Hb_009954_040 Hb_003020_230--Hb_000371_080 Hb_000613_140 Hb_000613_140 Hb_003020_230--Hb_000613_140 Hb_000170_010 Hb_000170_010 Hb_003020_230--Hb_000170_010 Hb_003020_230--Hb_001824_070 Hb_004837_140--Hb_000170_010 Hb_002918_200 Hb_002918_200 Hb_004837_140--Hb_002918_200 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004108_230 Hb_004108_230 Hb_004837_140--Hb_004108_230 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_000300_610 Hb_000300_610 Hb_009954_040--Hb_000300_610 Hb_002685_190 Hb_002685_190 Hb_009954_040--Hb_002685_190 Hb_000061_320 Hb_000061_320 Hb_009954_040--Hb_000061_320 Hb_000103_090 Hb_000103_090 Hb_009954_040--Hb_000103_090 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_001477_110 Hb_001477_110 Hb_001824_070--Hb_001477_110 Hb_009711_030 Hb_009711_030 Hb_001824_070--Hb_009711_030 Hb_001584_070 Hb_001584_070 Hb_001824_070--Hb_001584_070 Hb_003878_190 Hb_003878_190 Hb_001824_070--Hb_003878_190 Hb_001824_070--Hb_000371_080 Hb_000465_060 Hb_000465_060 Hb_001824_070--Hb_000465_060 Hb_005686_110 Hb_005686_110 Hb_000371_080--Hb_005686_110 Hb_000371_080--Hb_009711_030 Hb_022250_040 Hb_022250_040 Hb_000371_080--Hb_022250_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.51497 1.3505 1.47803 2.84648 5.135 8.36246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.504 11.6502 6.71352 4.14326 2.19082

CAGE analysis