Hb_004837_140

Information

Type -
Description -
Location Contig4837: 146930-149368
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa012469mg
description hypothetical protein
nr
ID XP_007223595.1
description hypothetical protein PRUPE_ppa012469mg [Prunus persica]
swissprot
ID Q93Z17
description 50S ribosomal protein HLP, mitochondrial OS=Arabidopsis thaliana GN=HLP PE=2 SV=1
trembl
ID M5XFS8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012469mg PE=3 SV=1
Gene Ontology
ID GO:0015934
description 50s ribosomal protein mitochondrial isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_44878: 146842-149377
cDNA
(Sanger)
(ID:Location)		 023_M19.ab1: 146948-148872

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004837_140 0.0 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
2 Hb_000170_010 0.0437533822 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_002918_200 0.0512693905 - - -
4 Hb_002963_010 0.0574805421 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
5 Hb_004108_230 0.0576683205 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
6 Hb_005997_010 0.0593614734 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
7 Hb_012338_010 0.0617437695 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000120_750 0.0638288819 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
9 Hb_003175_040 0.0642434999 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
10 Hb_000834_270 0.0643582866 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
11 Hb_008878_030 0.0661615793 - - PREDICTED: uncharacterized protein At1g10890-like [Musa acuminata subsp. malaccensis]
12 Hb_003927_130 0.0681400145 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
13 Hb_001383_060 0.0693424655 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
14 Hb_007479_020 0.0698959827 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
15 Hb_003020_230 0.0722348791 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
16 Hb_002477_070 0.072423831 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
17 Hb_002716_070 0.0755313063 - - PREDICTED: protein ABIL2 [Jatropha curcas]
18 Hb_000205_270 0.0760155248 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
19 Hb_153112_020 0.0763940053 - - PREDICTED: mediator of RNA polymerase II transcription subunit 22b-like [Jatropha curcas]
20 Hb_005432_030 0.0768740629 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]

Gene co-expression network

sample Hb_004837_140 Hb_004837_140 Hb_000170_010 Hb_000170_010 Hb_004837_140--Hb_000170_010 Hb_002918_200 Hb_002918_200 Hb_004837_140--Hb_002918_200 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_004108_230 Hb_004108_230 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_000170_010--Hb_012338_010 Hb_000170_010--Hb_002918_200 Hb_002918_200--Hb_004108_230 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_003175_040 Hb_003175_040 Hb_002918_200--Hb_003175_040 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_002963_010--Hb_000834_270 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_004108_230--Hb_003175_040 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_003020_230 Hb_003020_230 Hb_005997_010--Hb_003020_230 Hb_009954_040 Hb_009954_040 Hb_005997_010--Hb_009954_040 Hb_000087_020 Hb_000087_020 Hb_005997_010--Hb_000087_020 Hb_001824_070 Hb_001824_070 Hb_005997_010--Hb_001824_070 Hb_000371_080 Hb_000371_080 Hb_005997_010--Hb_000371_080 Hb_000300_610 Hb_000300_610 Hb_012338_010--Hb_000300_610 Hb_012338_010--Hb_004108_230 Hb_000061_320 Hb_000061_320 Hb_012338_010--Hb_000061_320 Hb_012338_010--Hb_005432_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.3956 13.135 17.2257 24.5382 50.3644 54.6923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
88.1664 98.7913 67.5978 31.114 21.456

CAGE analysis