Hb_000625_070

Information

Type transcription factor
Description TF Family: CSD
Location Contig625: 63802-64591
Sequence    

Annotation

kegg
ID pop:POPTR_0005s11495g
description cold-shock DNA-binding family protein
nr
ID XP_012065977.1
description PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
swissprot
ID O65639
description Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1
trembl
ID A0A067LQE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06552 PE=4 SV=1
Gene Ontology
ID GO:0003677
description cold shock protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000625_070 0.0 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
2 Hb_000170_010 0.0619006158 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_005432_030 0.0643823648 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
4 Hb_002027_210 0.0709579916 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
5 Hb_000025_120 0.07370686 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
6 Hb_004724_340 0.0758567814 - - PREDICTED: mitochondrial fission protein ELM1 [Jatropha curcas]
7 Hb_000146_020 0.0831158379 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
8 Hb_002963_010 0.0850747466 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
9 Hb_001360_050 0.0868455877 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
10 Hb_004678_050 0.0885580201 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
11 Hb_000496_060 0.0892875239 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
12 Hb_000173_220 0.0901784106 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
13 Hb_002716_070 0.090437564 - - PREDICTED: protein ABIL2 [Jatropha curcas]
14 Hb_002016_100 0.0915069351 - - Small nuclear ribonucleoprotein SM D3, putative [Ricinus communis]
15 Hb_004837_140 0.0934779913 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
16 Hb_000230_510 0.0955437231 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At5g19025 [Jatropha curcas]
17 Hb_000347_410 0.0957711549 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
18 Hb_002471_080 0.0959373219 - - oxidoreductase, putative [Ricinus communis]
19 Hb_000834_270 0.0960284121 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
20 Hb_012675_060 0.0969677188 - - hypothetical protein PRUPE_ppa007715mg [Prunus persica]

Gene co-expression network

sample Hb_000625_070 Hb_000625_070 Hb_000170_010 Hb_000170_010 Hb_000625_070--Hb_000170_010 Hb_005432_030 Hb_005432_030 Hb_000625_070--Hb_005432_030 Hb_002027_210 Hb_002027_210 Hb_000625_070--Hb_002027_210 Hb_000025_120 Hb_000025_120 Hb_000625_070--Hb_000025_120 Hb_004724_340 Hb_004724_340 Hb_000625_070--Hb_004724_340 Hb_000146_020 Hb_000146_020 Hb_000625_070--Hb_000146_020 Hb_004837_140 Hb_004837_140 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_000170_010--Hb_005432_030 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_005432_030--Hb_002027_210 Hb_000496_060 Hb_000496_060 Hb_005432_030--Hb_000496_060 Hb_004108_230 Hb_004108_230 Hb_005432_030--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_005432_030--Hb_003175_040 Hb_000173_220 Hb_000173_220 Hb_002027_210--Hb_000173_220 Hb_003376_030 Hb_003376_030 Hb_002027_210--Hb_003376_030 Hb_002027_210--Hb_000146_020 Hb_001191_090 Hb_001191_090 Hb_002027_210--Hb_001191_090 Hb_003455_040 Hb_003455_040 Hb_002027_210--Hb_003455_040 Hb_000025_120--Hb_000496_060 Hb_014720_080 Hb_014720_080 Hb_000025_120--Hb_014720_080 Hb_000347_410 Hb_000347_410 Hb_000025_120--Hb_000347_410 Hb_001105_070 Hb_001105_070 Hb_000025_120--Hb_001105_070 Hb_000025_120--Hb_000146_020 Hb_000834_270 Hb_000834_270 Hb_000025_120--Hb_000834_270 Hb_001360_050 Hb_001360_050 Hb_004724_340--Hb_001360_050 Hb_010080_090 Hb_010080_090 Hb_004724_340--Hb_010080_090 Hb_012675_060 Hb_012675_060 Hb_004724_340--Hb_012675_060 Hb_001833_110 Hb_001833_110 Hb_004724_340--Hb_001833_110 Hb_004724_340--Hb_000347_410 Hb_002471_080 Hb_002471_080 Hb_004724_340--Hb_002471_080 Hb_000146_020--Hb_000347_410 Hb_000146_020--Hb_000834_270 Hb_000146_020--Hb_003376_030 Hb_007943_090 Hb_007943_090 Hb_000146_020--Hb_007943_090 Hb_008289_060 Hb_008289_060 Hb_000146_020--Hb_008289_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0544 7.76758 2.5274 10.1421 15.0783 17.7493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.1779 31.2638 26.888 9.56887 10.6928

CAGE analysis