Hb_005432_030

Information

Type -
Description -
Location Contig5432: 55911-58287
Sequence    

Annotation

kegg
ID tcc:TCM_006432
description Basic-leucine zipper transcription factor family protein, putative isoform 1
nr
ID XP_012467680.1
description PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
swissprot
ID P42777
description G-box-binding factor 4 OS=Arabidopsis thaliana GN=GBF4 PE=1 SV=1
trembl
ID A0A0D2R9Z9
description Gossypium raimondii chromosome 2, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_002G207000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47882: 30566-58221
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005432_030 0.0 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
2 Hb_000170_010 0.0524520118 - - o-methyltransferase, putative [Ricinus communis]
3 Hb_002027_210 0.0605919275 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
4 Hb_000625_070 0.0643823648 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
5 Hb_000496_060 0.0681592552 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
6 Hb_004108_230 0.0728478477 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
7 Hb_003175_040 0.0752792947 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
8 Hb_000025_120 0.0756399478 - - PREDICTED: uncharacterized protein LOC105628946 isoform X1 [Jatropha curcas]
9 Hb_000146_020 0.0761066818 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
10 Hb_004837_140 0.0768740629 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
11 Hb_012338_010 0.0779928937 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002963_010 0.0786590026 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
13 Hb_002918_200 0.0793204519 - - -
14 Hb_000834_270 0.079676117 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
15 Hb_000120_750 0.0806174219 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
16 Hb_002716_070 0.0817626459 - - PREDICTED: protein ABIL2 [Jatropha curcas]
17 Hb_000840_030 0.0836772146 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
18 Hb_000329_310 0.0855838615 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
19 Hb_003376_030 0.0869641871 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
20 Hb_003632_010 0.0872026938 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005432_030 Hb_005432_030 Hb_000170_010 Hb_000170_010 Hb_005432_030--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_005432_030--Hb_002027_210 Hb_000625_070 Hb_000625_070 Hb_005432_030--Hb_000625_070 Hb_000496_060 Hb_000496_060 Hb_005432_030--Hb_000496_060 Hb_004108_230 Hb_004108_230 Hb_005432_030--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_005432_030--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_000173_220 Hb_000173_220 Hb_002027_210--Hb_000173_220 Hb_003376_030 Hb_003376_030 Hb_002027_210--Hb_003376_030 Hb_000146_020 Hb_000146_020 Hb_002027_210--Hb_000146_020 Hb_001191_090 Hb_001191_090 Hb_002027_210--Hb_001191_090 Hb_003455_040 Hb_003455_040 Hb_002027_210--Hb_003455_040 Hb_000625_070--Hb_002027_210 Hb_000025_120 Hb_000025_120 Hb_000625_070--Hb_000025_120 Hb_004724_340 Hb_004724_340 Hb_000625_070--Hb_004724_340 Hb_000625_070--Hb_000146_020 Hb_000496_060--Hb_000025_120 Hb_000496_060--Hb_003175_040 Hb_117134_010 Hb_117134_010 Hb_000496_060--Hb_117134_010 Hb_014720_080 Hb_014720_080 Hb_000496_060--Hb_014720_080 Hb_001833_110 Hb_001833_110 Hb_000496_060--Hb_001833_110 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_004108_230--Hb_003175_040 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_002918_200 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.1246 9.85486 7.28398 10.9229 20.4355 29.7089
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
55.7907 47.9148 39.4568 11.2219 15.0859

CAGE analysis