Hb_003408_020

Information

Type -
Description -
Location Contig3408: 41233-50912
Sequence    

Annotation

kegg
ID rcu:RCOM_0453040
description hypothetical protein
nr
ID XP_002533364.1
description hypothetical protein RCOM_0453040 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T545
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0453040 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35631: 41307-49914
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003408_020 0.0 - - hypothetical protein RCOM_0453040 [Ricinus communis]
2 Hb_003175_040 0.0604057065 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
3 Hb_000922_270 0.0659469018 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
4 Hb_000220_050 0.0674020375 transcription factor TF Family: Orphans PREDICTED: putative zinc finger protein At1g68190 isoform X1 [Jatropha curcas]
5 Hb_044662_070 0.0824162393 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
6 Hb_001863_480 0.0846677924 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
7 Hb_002527_070 0.0880812361 - - axonemal dynein light chain, putative [Ricinus communis]
8 Hb_014720_080 0.0881254716 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
9 Hb_157022_020 0.0883449295 - - nicotinamide mononucleotide adenylyltransferase, putative [Ricinus communis]
10 Hb_001711_030 0.0885989905 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
11 Hb_000089_160 0.0891313297 - - 60S ribosomal protein L5B [Hevea brasiliensis]
12 Hb_000051_040 0.0908699352 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
13 Hb_021650_030 0.0919211438 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
14 Hb_000496_060 0.093122903 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH3 [Jatropha curcas]
15 Hb_000174_070 0.0950246952 - - PREDICTED: CMP-sialic acid transporter 2-like isoform X2 [Jatropha curcas]
16 Hb_001691_210 0.0950558986 transcription factor TF Family: C2C2-LSD hypothetical protein JCGZ_21436 [Jatropha curcas]
17 Hb_001722_100 0.0951055515 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007924_020 0.0952168391 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
19 Hb_007479_020 0.095373968 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
20 Hb_000061_320 0.0966612069 - - PREDICTED: uncharacterized protein LOC105640575 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003408_020 Hb_003408_020 Hb_003175_040 Hb_003175_040 Hb_003408_020--Hb_003175_040 Hb_000922_270 Hb_000922_270 Hb_003408_020--Hb_000922_270 Hb_000220_050 Hb_000220_050 Hb_003408_020--Hb_000220_050 Hb_044662_070 Hb_044662_070 Hb_003408_020--Hb_044662_070 Hb_001863_480 Hb_001863_480 Hb_003408_020--Hb_001863_480 Hb_002527_070 Hb_002527_070 Hb_003408_020--Hb_002527_070 Hb_004108_230 Hb_004108_230 Hb_003175_040--Hb_004108_230 Hb_002918_200 Hb_002918_200 Hb_003175_040--Hb_002918_200 Hb_004837_140 Hb_004837_140 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_001711_030 Hb_001711_030 Hb_000922_270--Hb_001711_030 Hb_000051_040 Hb_000051_040 Hb_000922_270--Hb_000051_040 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_000220_050--Hb_003175_040 Hb_000317_030 Hb_000317_030 Hb_000220_050--Hb_000317_030 Hb_000089_160 Hb_000089_160 Hb_000220_050--Hb_000089_160 Hb_000061_320 Hb_000061_320 Hb_000220_050--Hb_000061_320 Hb_000220_050--Hb_000922_270 Hb_023386_080 Hb_023386_080 Hb_044662_070--Hb_023386_080 Hb_044662_070--Hb_004108_230 Hb_007924_020 Hb_007924_020 Hb_044662_070--Hb_007924_020 Hb_044662_070--Hb_003175_040 Hb_003376_120 Hb_003376_120 Hb_044662_070--Hb_003376_120 Hb_001863_480--Hb_001711_030 Hb_004738_010 Hb_004738_010 Hb_001863_480--Hb_004738_010 Hb_001439_170 Hb_001439_170 Hb_001863_480--Hb_001439_170 Hb_171554_080 Hb_171554_080 Hb_001863_480--Hb_171554_080 Hb_002539_080 Hb_002539_080 Hb_001863_480--Hb_002539_080 Hb_001427_120 Hb_001427_120 Hb_002527_070--Hb_001427_120 Hb_000861_040 Hb_000861_040 Hb_002527_070--Hb_000861_040 Hb_002527_070--Hb_001711_030 Hb_003408_030 Hb_003408_030 Hb_002527_070--Hb_003408_030 Hb_000983_100 Hb_000983_100 Hb_002527_070--Hb_000983_100 Hb_002352_010 Hb_002352_010 Hb_002527_070--Hb_002352_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.4184 6.46897 9.87273 8.95089 20.0906 25.8134
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.5965 41.2456 45.9019 19.1491 5.97605

CAGE analysis