Hb_000051_040

Information

Type -
Description -
Location Contig51: 42637-51179
Sequence    

Annotation

kegg
ID sot:102597788
description uncharacterized LOC102597788
nr
ID XP_006340085.1
description PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1C3V1
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46241: 42624-51248 , PASA_asmbl_46242: 43024-44428 , PASA_asmbl_46244: 49303-49597
cDNA
(Sanger)
(ID:Location)		 049_N18.ab1: 42624-51248

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000051_040 0.0 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
2 Hb_007021_020 0.0689325583 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
3 Hb_001711_030 0.0758318271 - - PREDICTED: uncharacterized protein LOC105642409 [Jatropha curcas]
4 Hb_000922_270 0.0824675172 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
5 Hb_000261_460 0.087561869 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
6 Hb_009404_020 0.0894587089 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003408_020 0.0908699352 - - hypothetical protein RCOM_0453040 [Ricinus communis]
8 Hb_012522_030 0.092166935 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_003175_040 0.092194278 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
10 Hb_183963_020 0.0936367524 - - PREDICTED: uncharacterized protein LOC105644615 [Jatropha curcas]
11 Hb_002282_020 0.0953840217 - - PREDICTED: uncharacterized protein LOC105629828 [Jatropha curcas]
12 Hb_002527_070 0.0955076192 - - axonemal dynein light chain, putative [Ricinus communis]
13 Hb_000089_160 0.0955373635 - - 60S ribosomal protein L5B [Hevea brasiliensis]
14 Hb_000648_060 0.098256135 - - hypothetical protein POPTR_0019s10570g [Populus trichocarpa]
15 Hb_001427_120 0.0986811588 - - PREDICTED: uncharacterized protein LOC105637787 [Jatropha curcas]
16 Hb_000567_170 0.0988505832 - - PREDICTED: putative lipase YDR444W isoform X1 [Jatropha curcas]
17 Hb_001616_060 0.0997265015 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
18 Hb_000362_210 0.1010729428 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
19 Hb_000045_190 0.1014803844 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
20 Hb_000212_260 0.1034225295 - - acyl-carrier-protein [Triadica sebifera]

Gene co-expression network

sample Hb_000051_040 Hb_000051_040 Hb_007021_020 Hb_007021_020 Hb_000051_040--Hb_007021_020 Hb_001711_030 Hb_001711_030 Hb_000051_040--Hb_001711_030 Hb_000922_270 Hb_000922_270 Hb_000051_040--Hb_000922_270 Hb_000261_460 Hb_000261_460 Hb_000051_040--Hb_000261_460 Hb_009404_020 Hb_009404_020 Hb_000051_040--Hb_009404_020 Hb_003408_020 Hb_003408_020 Hb_000051_040--Hb_003408_020 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_002660_160 Hb_002660_160 Hb_007021_020--Hb_002660_160 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_001863_480 Hb_001863_480 Hb_001711_030--Hb_001863_480 Hb_012522_030 Hb_012522_030 Hb_001711_030--Hb_012522_030 Hb_002527_070 Hb_002527_070 Hb_001711_030--Hb_002527_070 Hb_001711_030--Hb_000922_270 Hb_001439_170 Hb_001439_170 Hb_001711_030--Hb_001439_170 Hb_000922_270--Hb_003408_020 Hb_007666_020 Hb_007666_020 Hb_000922_270--Hb_007666_020 Hb_010172_070 Hb_010172_070 Hb_000922_270--Hb_010172_070 Hb_014720_080 Hb_014720_080 Hb_000922_270--Hb_014720_080 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_003680_070 Hb_003680_070 Hb_000261_460--Hb_003680_070 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_011465_040 Hb_011465_040 Hb_009404_020--Hb_011465_040 Hb_001616_060 Hb_001616_060 Hb_009404_020--Hb_001616_060 Hb_000487_310 Hb_000487_310 Hb_009404_020--Hb_000487_310 Hb_004108_230 Hb_004108_230 Hb_009404_020--Hb_004108_230 Hb_009404_020--Hb_000922_270 Hb_002918_200 Hb_002918_200 Hb_009404_020--Hb_002918_200 Hb_003175_040 Hb_003175_040 Hb_003408_020--Hb_003175_040 Hb_000220_050 Hb_000220_050 Hb_003408_020--Hb_000220_050 Hb_044662_070 Hb_044662_070 Hb_003408_020--Hb_044662_070 Hb_003408_020--Hb_001863_480 Hb_003408_020--Hb_002527_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.2268 1.39495 2.17055 1.13096 5.57612 8.73384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.0462 16.6661 14.2025 4.33249 1.55486

CAGE analysis