Hb_003680_070

Information

Type -
Description -
Location Contig3680: 59311-61188
Sequence    

Annotation

kegg
ID tcc:TCM_022371
description hypothetical protein
nr
ID XP_012082523.1
description PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
swissprot
ID Q9LI74
description Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1
trembl
ID A0A067JZE8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16611 PE=4 SV=1
Gene Ontology
ID GO:0003824
description protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37833: 60588-60973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003680_070 0.0 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
2 Hb_000261_460 0.0906108694 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
3 Hb_001538_100 0.1045923947 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
4 Hb_010172_030 0.1055569722 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
5 Hb_000865_070 0.1061514915 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
6 Hb_002781_020 0.1078201421 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
7 Hb_001754_010 0.1108031841 - - translationally controlled tumor protein [Hevea brasiliensis]
8 Hb_010710_020 0.1120267236 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
9 Hb_000161_050 0.1121200272 - - conserved hypothetical protein [Ricinus communis]
10 Hb_012265_010 0.1127531897 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
11 Hb_000333_090 0.115487535 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
12 Hb_000922_100 0.1176048587 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
13 Hb_007021_020 0.1176186286 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
14 Hb_000193_200 0.1185371338 - - rotamase, putative [Ricinus communis]
15 Hb_001123_120 0.1189183889 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
16 Hb_001545_060 0.119774285 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
17 Hb_003376_130 0.1200835159 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
18 Hb_003086_100 0.1209816432 - - hypothetical protein JCGZ_08729 [Jatropha curcas]
19 Hb_000051_040 0.12187806 - - PREDICTED: uncharacterized protein LOC102597788 [Solanum tuberosum]
20 Hb_001153_080 0.1224012408 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL19 [Jatropha curcas]

Gene co-expression network

sample Hb_003680_070 Hb_003680_070 Hb_000261_460 Hb_000261_460 Hb_003680_070--Hb_000261_460 Hb_001538_100 Hb_001538_100 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_002781_020 Hb_002781_020 Hb_003680_070--Hb_002781_020 Hb_001754_010 Hb_001754_010 Hb_003680_070--Hb_001754_010 Hb_005618_040 Hb_005618_040 Hb_000261_460--Hb_005618_040 Hb_000089_160 Hb_000089_160 Hb_000261_460--Hb_000089_160 Hb_000051_040 Hb_000051_040 Hb_000261_460--Hb_000051_040 Hb_007021_020 Hb_007021_020 Hb_000261_460--Hb_007021_020 Hb_100506_010 Hb_100506_010 Hb_000261_460--Hb_100506_010 Hb_004109_020 Hb_004109_020 Hb_001538_100--Hb_004109_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_002540_030 Hb_002540_030 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_148930_010 Hb_148930_010 Hb_001538_100--Hb_148930_010 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_000212_260 Hb_000212_260 Hb_010172_030--Hb_000212_260 Hb_002660_160 Hb_002660_160 Hb_010172_030--Hb_002660_160 Hb_000362_210 Hb_000362_210 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090 Hb_003226_280 Hb_003226_280 Hb_000865_070--Hb_003226_280 Hb_000865_070--Hb_000089_160 Hb_010560_040 Hb_010560_040 Hb_000865_070--Hb_010560_040 Hb_000030_100 Hb_000030_100 Hb_000865_070--Hb_000030_100 Hb_000363_200 Hb_000363_200 Hb_000865_070--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_000865_070--Hb_002078_460 Hb_000634_050 Hb_000634_050 Hb_002781_020--Hb_000634_050 Hb_008847_020 Hb_008847_020 Hb_002781_020--Hb_008847_020 Hb_000161_050 Hb_000161_050 Hb_002781_020--Hb_000161_050 Hb_002781_020--Hb_000362_210 Hb_000045_190 Hb_000045_190 Hb_002781_020--Hb_000045_190 Hb_001629_100 Hb_001629_100 Hb_001754_010--Hb_001629_100 Hb_000120_590 Hb_000120_590 Hb_001754_010--Hb_000120_590 Hb_100777_010 Hb_100777_010 Hb_001754_010--Hb_100777_010 Hb_130291_010 Hb_130291_010 Hb_001754_010--Hb_130291_010 Hb_001754_010--Hb_000333_090 Hb_001754_010--Hb_010172_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.5847 2.89622 1.19775 5.54436 12.9842 23.9473
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
63.5338 53.7443 30.5863 19.9655 4.01634

CAGE analysis