Hb_010560_040

Information

Type -
Description -
Location Contig10560: 20558-21602
Sequence    

Annotation

kegg
ID tcc:TCM_030340
description Mediator of RNA polymerase II transcription subunit 11
nr
ID XP_012091259.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
swissprot
ID Q6ID77
description Mediator of RNA polymerase II transcription subunit 11 OS=Arabidopsis thaliana GN=MED11 PE=1 SV=1
trembl
ID A0A067JMG7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21150 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 11-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01860: 19540-20025 , PASA_asmbl_01861: 20578-21486
cDNA
(Sanger)
(ID:Location)		 010_I16.ab1: 20578-21352 , 025_J23r.ab1: 18029-20380

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010560_040 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 11 [Jatropha curcas]
2 Hb_000742_110 0.0639269506 - - hypothetical protein JCGZ_09215 [Jatropha curcas]
3 Hb_003097_210 0.0754987689 - - PREDICTED: uncharacterized protein LOC105631194 isoform X1 [Jatropha curcas]
4 Hb_000865_070 0.0857173869 - - Protein FAR1-RELATED SEQUENCE 3 [Glycine soja]
5 Hb_155764_010 0.1024451008 - - -
6 Hb_048476_050 0.1085445854 - - semialdehyde dehydrogenase family protein [Populus trichocarpa]
7 Hb_001427_230 0.1105306089 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000010_470 0.1158286867 - - Galactose oxidase/kelch repeat superfamily protein isoform 2 [Theobroma cacao]
9 Hb_000363_200 0.116101251 - - 40S ribosomal protein S8, putative [Ricinus communis]
10 Hb_011953_020 0.1194247028 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
11 Hb_003226_280 0.1194951732 - - PREDICTED: peter Pan-like protein [Populus euphratica]
12 Hb_181600_010 0.1199238023 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
13 Hb_004678_050 0.1226939112 - - PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase [Jatropha curcas]
14 Hb_002471_080 0.123463666 - - oxidoreductase, putative [Ricinus communis]
15 Hb_001688_020 0.1235009318 - - PREDICTED: uncharacterized protein LOC103438026 [Malus domestica]
16 Hb_001360_050 0.1238446021 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
17 Hb_116898_010 0.1249470906 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
18 Hb_001881_020 0.1253992688 - - clathrin binding protein, putative [Ricinus communis]
19 Hb_000648_020 0.1262881877 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
20 Hb_001700_020 0.1268586034 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]

Gene co-expression network

sample Hb_010560_040 Hb_010560_040 Hb_000742_110 Hb_000742_110 Hb_010560_040--Hb_000742_110 Hb_003097_210 Hb_003097_210 Hb_010560_040--Hb_003097_210 Hb_000865_070 Hb_000865_070 Hb_010560_040--Hb_000865_070 Hb_155764_010 Hb_155764_010 Hb_010560_040--Hb_155764_010 Hb_048476_050 Hb_048476_050 Hb_010560_040--Hb_048476_050 Hb_001427_230 Hb_001427_230 Hb_010560_040--Hb_001427_230 Hb_000742_110--Hb_003097_210 Hb_181600_010 Hb_181600_010 Hb_000742_110--Hb_181600_010 Hb_000742_110--Hb_155764_010 Hb_000742_110--Hb_000865_070 Hb_000742_110--Hb_048476_050 Hb_003097_210--Hb_155764_010 Hb_001688_020 Hb_001688_020 Hb_003097_210--Hb_001688_020 Hb_003226_280 Hb_003226_280 Hb_003097_210--Hb_003226_280 Hb_000363_200 Hb_000363_200 Hb_003097_210--Hb_000363_200 Hb_003097_210--Hb_000865_070 Hb_000865_070--Hb_003226_280 Hb_000089_160 Hb_000089_160 Hb_000865_070--Hb_000089_160 Hb_000030_100 Hb_000030_100 Hb_000865_070--Hb_000030_100 Hb_000865_070--Hb_000363_200 Hb_002078_460 Hb_002078_460 Hb_000865_070--Hb_002078_460 Hb_116898_010 Hb_116898_010 Hb_155764_010--Hb_116898_010 Hb_027073_040 Hb_027073_040 Hb_155764_010--Hb_027073_040 Hb_002301_230 Hb_002301_230 Hb_155764_010--Hb_002301_230 Hb_012114_040 Hb_012114_040 Hb_155764_010--Hb_012114_040 Hb_000010_470 Hb_000010_470 Hb_155764_010--Hb_000010_470 Hb_048476_050--Hb_181600_010 Hb_048476_050--Hb_116898_010 Hb_048476_050--Hb_155764_010 Hb_048476_050--Hb_000010_470 Hb_048476_050--Hb_003097_210 Hb_001307_090 Hb_001307_090 Hb_001427_230--Hb_001307_090 Hb_000722_040 Hb_000722_040 Hb_001427_230--Hb_000722_040 Hb_000398_160 Hb_000398_160 Hb_001427_230--Hb_000398_160 Hb_000648_020 Hb_000648_020 Hb_001427_230--Hb_000648_020 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_124755_010 Hb_124755_010 Hb_001427_230--Hb_124755_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.1997 9.30868 4.14932 13.6675 18.2438 33.6827
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.175 52.6785 59.4084 46.8769 10.2829

CAGE analysis