Hb_000648_020

Information

Type -
Description -
Location Contig648: 46632-49766
Sequence    

Annotation

kegg
ID vvi:100259812
description chaperone protein dnaJ 10
nr
ID XP_012073517.1
description PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
swissprot
ID Q8GYX8
description Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2
trembl
ID A0A067KWU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07996 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52414: 43164-47408 , PASA_asmbl_52415: 46634-47408 , PASA_asmbl_52416: 42641-65201 , PASA_asmbl_52418: 48508-48797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000648_020 0.0 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
2 Hb_002025_300 0.0807735276 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
3 Hb_124755_010 0.0871758752 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
4 Hb_001427_230 0.0922198098 - - conserved hypothetical protein [Ricinus communis]
5 Hb_012490_050 0.1001557464 - - PREDICTED: uncharacterized protein LOC105637921 [Jatropha curcas]
6 Hb_000224_090 0.103170237 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
7 Hb_002471_080 0.1049379868 - - oxidoreductase, putative [Ricinus communis]
8 Hb_002719_080 0.1085537955 - - hypothetical protein POPTR_0006s27920g [Populus trichocarpa]
9 Hb_001700_020 0.1110243096 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
10 Hb_026048_070 0.1111008119 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
11 Hb_001307_090 0.1123023208 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
12 Hb_000722_040 0.1166510997 - - -
13 Hb_000364_210 0.116806772 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
14 Hb_005914_200 0.1184877906 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
15 Hb_000236_150 0.1189225406 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
16 Hb_000024_030 0.1189595959 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
17 Hb_012539_020 0.1200617906 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
18 Hb_000389_080 0.1205639448 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
19 Hb_000046_290 0.1215963024 - - PREDICTED: tubby-like F-box protein 3 [Tarenaya hassleriana]
20 Hb_011644_030 0.1222607958 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_000648_020 Hb_000648_020 Hb_002025_300 Hb_002025_300 Hb_000648_020--Hb_002025_300 Hb_124755_010 Hb_124755_010 Hb_000648_020--Hb_124755_010 Hb_001427_230 Hb_001427_230 Hb_000648_020--Hb_001427_230 Hb_012490_050 Hb_012490_050 Hb_000648_020--Hb_012490_050 Hb_000224_090 Hb_000224_090 Hb_000648_020--Hb_000224_090 Hb_002471_080 Hb_002471_080 Hb_000648_020--Hb_002471_080 Hb_006718_010 Hb_006718_010 Hb_002025_300--Hb_006718_010 Hb_005914_200 Hb_005914_200 Hb_002025_300--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_002025_300--Hb_002843_210 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_000025_240 Hb_000025_240 Hb_002025_300--Hb_000025_240 Hb_000024_030 Hb_000024_030 Hb_124755_010--Hb_000024_030 Hb_124755_010--Hb_002471_080 Hb_001307_090 Hb_001307_090 Hb_124755_010--Hb_001307_090 Hb_004374_140 Hb_004374_140 Hb_124755_010--Hb_004374_140 Hb_000975_110 Hb_000975_110 Hb_124755_010--Hb_000975_110 Hb_000122_020 Hb_000122_020 Hb_124755_010--Hb_000122_020 Hb_001427_230--Hb_001307_090 Hb_000722_040 Hb_000722_040 Hb_001427_230--Hb_000722_040 Hb_000398_160 Hb_000398_160 Hb_001427_230--Hb_000398_160 Hb_000224_120 Hb_000224_120 Hb_001427_230--Hb_000224_120 Hb_001427_230--Hb_124755_010 Hb_000834_030 Hb_000834_030 Hb_012490_050--Hb_000834_030 Hb_005463_140 Hb_005463_140 Hb_012490_050--Hb_005463_140 Hb_011644_030 Hb_011644_030 Hb_012490_050--Hb_011644_030 Hb_000707_020 Hb_000707_020 Hb_012490_050--Hb_000707_020 Hb_000817_030 Hb_000817_030 Hb_012490_050--Hb_000817_030 Hb_004659_060 Hb_004659_060 Hb_012490_050--Hb_004659_060 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_003053_030 Hb_003053_030 Hb_000224_090--Hb_003053_030 Hb_000069_100 Hb_000069_100 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000224_090--Hb_000722_040 Hb_000224_090--Hb_012539_020 Hb_000046_290 Hb_000046_290 Hb_002471_080--Hb_000046_290 Hb_001360_050 Hb_001360_050 Hb_002471_080--Hb_001360_050 Hb_001829_060 Hb_001829_060 Hb_002471_080--Hb_001829_060 Hb_000329_310 Hb_000329_310 Hb_002471_080--Hb_000329_310 Hb_002471_080--Hb_000024_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.25659 2.14634 1.94672 9.30789 6.96997 19.6269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
36.2005 40.8579 31.6438 17.4963 9.13361

CAGE analysis