Hb_002025_300

Information

Type -
Description -
Location Contig2025: 241627-241935
Sequence    

Annotation

kegg
ID cic:CICLE_v10017277mg
description hypothetical protein
nr
ID XP_012072408.1
description PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
swissprot
ID Q9SKC9
description NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Arabidopsis thaliana GN=At2g02050 PE=3 SV=1
trembl
ID A0A067KTF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04846 PE=4 SV=1
Gene Ontology
ID GO:0005747
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20597: 238099-242014
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002025_300 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
2 Hb_000648_020 0.0807735276 - - PREDICTED: chaperone protein dnaJ 10-like [Jatropha curcas]
3 Hb_006718_010 0.0897870333 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
4 Hb_005914_200 0.1027738336 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
5 Hb_002843_210 0.1055341675 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
6 Hb_012539_020 0.1069342103 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
7 Hb_000025_240 0.1116200442 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
8 Hb_001427_230 0.1117260357 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000672_120 0.1121932669 - - V-type proton ATPase subunit G 1 [Jatropha curcas]
10 Hb_000224_090 0.1145418696 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
11 Hb_003561_030 0.1175991167 - - PREDICTED: uncharacterized protein LOC105645274 [Jatropha curcas]
12 Hb_004041_040 0.1181282349 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
13 Hb_000389_080 0.118343408 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
14 Hb_000236_150 0.1211509422 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
15 Hb_000722_040 0.1216551068 - - -
16 Hb_000367_210 0.1223906754 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
17 Hb_001307_090 0.1245626944 - - hypothetical protein CISIN_1g0263261mg [Citrus sinensis]
18 Hb_007520_060 0.1282422533 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
19 Hb_001700_020 0.1288113147 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
20 Hb_008841_010 0.1294888688 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]

Gene co-expression network

sample Hb_002025_300 Hb_002025_300 Hb_000648_020 Hb_000648_020 Hb_002025_300--Hb_000648_020 Hb_006718_010 Hb_006718_010 Hb_002025_300--Hb_006718_010 Hb_005914_200 Hb_005914_200 Hb_002025_300--Hb_005914_200 Hb_002843_210 Hb_002843_210 Hb_002025_300--Hb_002843_210 Hb_012539_020 Hb_012539_020 Hb_002025_300--Hb_012539_020 Hb_000025_240 Hb_000025_240 Hb_002025_300--Hb_000025_240 Hb_124755_010 Hb_124755_010 Hb_000648_020--Hb_124755_010 Hb_001427_230 Hb_001427_230 Hb_000648_020--Hb_001427_230 Hb_012490_050 Hb_012490_050 Hb_000648_020--Hb_012490_050 Hb_000224_090 Hb_000224_090 Hb_000648_020--Hb_000224_090 Hb_002471_080 Hb_002471_080 Hb_000648_020--Hb_002471_080 Hb_000367_030 Hb_000367_030 Hb_006718_010--Hb_000367_030 Hb_006541_020 Hb_006541_020 Hb_006718_010--Hb_006541_020 Hb_006718_010--Hb_000025_240 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_007520_060 Hb_007520_060 Hb_006718_010--Hb_007520_060 Hb_001780_050 Hb_001780_050 Hb_005914_200--Hb_001780_050 Hb_000236_150 Hb_000236_150 Hb_005914_200--Hb_000236_150 Hb_005914_200--Hb_012539_020 Hb_004754_070 Hb_004754_070 Hb_005914_200--Hb_004754_070 Hb_000163_130 Hb_000163_130 Hb_005914_200--Hb_000163_130 Hb_000976_250 Hb_000976_250 Hb_005914_200--Hb_000976_250 Hb_003561_030 Hb_003561_030 Hb_002843_210--Hb_003561_030 Hb_000367_210 Hb_000367_210 Hb_002843_210--Hb_000367_210 Hb_187083_010 Hb_187083_010 Hb_002843_210--Hb_187083_010 Hb_014834_030 Hb_014834_030 Hb_002843_210--Hb_014834_030 Hb_075359_010 Hb_075359_010 Hb_002843_210--Hb_075359_010 Hb_000389_080 Hb_000389_080 Hb_012539_020--Hb_000389_080 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_000025_240--Hb_006541_020 Hb_008748_020 Hb_008748_020 Hb_000025_240--Hb_008748_020 Hb_000025_240--Hb_005914_200 Hb_000025_240--Hb_014834_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.8872 14.0421 15.1714 119.958 35.0035 191.706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
404.515 443.832 302.4 133.77 64.0551

CAGE analysis