Hb_000367_030

Information

Type -
Description -
Location Contig367: 55888-57909
Sequence    

Annotation

kegg
ID pop:POPTR_0015s06690g
description hypothetical protein
nr
ID XP_006374385.1
description hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
swissprot
ID Q9SD88
description Protein Asterix OS=Arabidopsis thaliana GN=At5g07960 PE=3 SV=1
trembl
ID U5FS79
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s06690g PE=4 SV=1
Gene Ontology
ID GO:0009507
description protein asterix

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37730: 55840-58100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000367_030 0.0 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
2 Hb_006718_010 0.0944817326 - - PREDICTED: histone H2AX-like [Elaeis guineensis]
3 Hb_006541_020 0.1117947027 - - unknown [Lotus japonicus]
4 Hb_002843_210 0.1236268307 - - PREDICTED: uncharacterized protein LOC105647178 [Jatropha curcas]
5 Hb_005245_070 0.1287208331 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
6 Hb_000025_240 0.1351702412 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
7 Hb_007520_060 0.1369871298 - - PREDICTED: putative exosome complex component rrp40 [Jatropha curcas]
8 Hb_002025_300 0.1407770629 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 [Jatropha curcas]
9 Hb_000367_210 0.1416064667 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
10 Hb_001623_430 0.1493540239 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
11 Hb_009659_020 0.1499487609 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
12 Hb_000780_210 0.1505232244 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
13 Hb_004223_260 0.1530011042 - - hypothetical protein F383_09277 [Gossypium arboreum]
14 Hb_075359_010 0.1538970431 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_004333_030 0.1544285458 - - PREDICTED: vacuolar protein sorting-associated protein 26A [Jatropha curcas]
16 Hb_000820_130 0.1551398137 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
17 Hb_014834_030 0.1555587653 - - -
18 Hb_001935_150 0.1594947935 - - PREDICTED: protein transport protein Sec61 subunit beta [Jatropha curcas]
19 Hb_005914_200 0.1598579323 - - PREDICTED: 60S ribosomal protein L23-like isoform X1 [Tarenaya hassleriana]
20 Hb_008748_020 0.1615815209 - - hypothetical protein B456_005G210700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000367_030 Hb_000367_030 Hb_006718_010 Hb_006718_010 Hb_000367_030--Hb_006718_010 Hb_006541_020 Hb_006541_020 Hb_000367_030--Hb_006541_020 Hb_002843_210 Hb_002843_210 Hb_000367_030--Hb_002843_210 Hb_005245_070 Hb_005245_070 Hb_000367_030--Hb_005245_070 Hb_000025_240 Hb_000025_240 Hb_000367_030--Hb_000025_240 Hb_007520_060 Hb_007520_060 Hb_000367_030--Hb_007520_060 Hb_002025_300 Hb_002025_300 Hb_006718_010--Hb_002025_300 Hb_006718_010--Hb_006541_020 Hb_006718_010--Hb_000025_240 Hb_004223_260 Hb_004223_260 Hb_006718_010--Hb_004223_260 Hb_006718_010--Hb_007520_060 Hb_006541_020--Hb_000025_240 Hb_008748_020 Hb_008748_020 Hb_006541_020--Hb_008748_020 Hb_006541_020--Hb_007520_060 Hb_000367_210 Hb_000367_210 Hb_006541_020--Hb_000367_210 Hb_003561_030 Hb_003561_030 Hb_002843_210--Hb_003561_030 Hb_002843_210--Hb_000367_210 Hb_187083_010 Hb_187083_010 Hb_002843_210--Hb_187083_010 Hb_014834_030 Hb_014834_030 Hb_002843_210--Hb_014834_030 Hb_002843_210--Hb_002025_300 Hb_075359_010 Hb_075359_010 Hb_002843_210--Hb_075359_010 Hb_000975_180 Hb_000975_180 Hb_005245_070--Hb_000975_180 Hb_003502_100 Hb_003502_100 Hb_005245_070--Hb_003502_100 Hb_021924_010 Hb_021924_010 Hb_005245_070--Hb_021924_010 Hb_004429_110 Hb_004429_110 Hb_005245_070--Hb_004429_110 Hb_004128_040 Hb_004128_040 Hb_005245_070--Hb_004128_040 Hb_000025_240--Hb_008748_020 Hb_005914_200 Hb_005914_200 Hb_000025_240--Hb_005914_200 Hb_000025_240--Hb_014834_030 Hb_000025_240--Hb_002025_300 Hb_009659_020 Hb_009659_020 Hb_007520_060--Hb_009659_020 Hb_030565_040 Hb_030565_040 Hb_007520_060--Hb_030565_040 Hb_007520_060--Hb_000367_210 Hb_000419_130 Hb_000419_130 Hb_007520_060--Hb_000419_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.26631 0.717841 0.39002 11.5263 1.56049 8.67987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9379 30.831 10.2449 7.96437 1.72513

CAGE analysis