Hb_003502_100

Information

Type -
Description -
Location Contig3502: 99565-110558
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36482: 95916-100633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003502_100 0.0 - - -
2 Hb_005245_070 0.1466588837 - - PREDICTED: uncharacterized protein LOC105643658 [Jatropha curcas]
3 Hb_004128_040 0.1557751314 - - -
4 Hb_000975_180 0.1824916359 - - Uncharacterized protein TCM_041879 [Theobroma cacao]
5 Hb_001842_050 0.2012316292 - - PREDICTED: protein BUD31 homolog 1-like [Jatropha curcas]
6 Hb_000367_030 0.2044706849 - - hypothetical protein POPTR_0015s06690g [Populus trichocarpa]
7 Hb_009778_040 0.205269881 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
8 Hb_021924_010 0.2057840498 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
9 Hb_008215_030 0.2104751274 - - hypothetical protein 3 [Hevea brasiliensis]
10 Hb_000130_100 0.2135421995 - - hypothetical protein CICLE_v10022662mg [Citrus clementina]
11 Hb_033376_010 0.2141747694 - - hypothetical protein POPTR_0008s02960g [Populus trichocarpa]
12 Hb_007553_010 0.2153295696 - - -
13 Hb_116420_020 0.2176716931 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
14 Hb_002838_030 0.223699852 - - 40S ribosomal protein S25A [Hevea brasiliensis]
15 Hb_004429_110 0.2245621022 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
16 Hb_002316_120 0.224686176 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
17 Hb_000367_210 0.2255286653 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 3 [Jatropha curcas]
18 Hb_000820_130 0.2259657877 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
19 Hb_004755_030 0.2267708591 - - EG964 [Manihot glaziovii]
20 Hb_003581_300 0.2278519617 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105630404 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003502_100 Hb_003502_100 Hb_005245_070 Hb_005245_070 Hb_003502_100--Hb_005245_070 Hb_004128_040 Hb_004128_040 Hb_003502_100--Hb_004128_040 Hb_000975_180 Hb_000975_180 Hb_003502_100--Hb_000975_180 Hb_001842_050 Hb_001842_050 Hb_003502_100--Hb_001842_050 Hb_000367_030 Hb_000367_030 Hb_003502_100--Hb_000367_030 Hb_009778_040 Hb_009778_040 Hb_003502_100--Hb_009778_040 Hb_005245_070--Hb_000367_030 Hb_005245_070--Hb_000975_180 Hb_021924_010 Hb_021924_010 Hb_005245_070--Hb_021924_010 Hb_004429_110 Hb_004429_110 Hb_005245_070--Hb_004429_110 Hb_005245_070--Hb_004128_040 Hb_004128_040--Hb_004429_110 Hb_021056_010 Hb_021056_010 Hb_004128_040--Hb_021056_010 Hb_004128_040--Hb_021924_010 Hb_002232_470 Hb_002232_470 Hb_004128_040--Hb_002232_470 Hb_000975_180--Hb_021924_010 Hb_001488_400 Hb_001488_400 Hb_000975_180--Hb_001488_400 Hb_000130_100 Hb_000130_100 Hb_000975_180--Hb_000130_100 Hb_000270_720 Hb_000270_720 Hb_000975_180--Hb_000270_720 Hb_004755_030 Hb_004755_030 Hb_000975_180--Hb_004755_030 Hb_000789_110 Hb_000789_110 Hb_000975_180--Hb_000789_110 Hb_004162_210 Hb_004162_210 Hb_001842_050--Hb_004162_210 Hb_000352_290 Hb_000352_290 Hb_001842_050--Hb_000352_290 Hb_000084_260 Hb_000084_260 Hb_001842_050--Hb_000084_260 Hb_006915_040 Hb_006915_040 Hb_001842_050--Hb_006915_040 Hb_130235_010 Hb_130235_010 Hb_001842_050--Hb_130235_010 Hb_000329_270 Hb_000329_270 Hb_001842_050--Hb_000329_270 Hb_006718_010 Hb_006718_010 Hb_000367_030--Hb_006718_010 Hb_006541_020 Hb_006541_020 Hb_000367_030--Hb_006541_020 Hb_002843_210 Hb_002843_210 Hb_000367_030--Hb_002843_210 Hb_000025_240 Hb_000025_240 Hb_000367_030--Hb_000025_240 Hb_007520_060 Hb_007520_060 Hb_000367_030--Hb_007520_060 Hb_002081_030 Hb_002081_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14403 0 0.146709 0.792971 0.0451189 0.153343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.11782 1.22974 0.30403 0.361785 0

CAGE analysis